Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01297 ATGTACTACGATCAAGGCCACACTCAATGCAGTGGCAGCAGTGCTAAAGTTGCTGCTGTCCCTGAGAGTCCCCCGCCACCAGGGCGCCATCCAATTTACCGTGGAGTAAGGCGTAGGAGTGGCGGCAAATGGGCTTCTGAAATCCGTGAGCCTAGGAAAACGAAACGCATCTGGCTCGGCACATTTCCCTTGCCGGAAATGGCCGCTGTTGCTTACGATGTCGCTGCACTTGCACTCAAAGGTCGTGACGCTGAGCTCAACTTCCCAAACTCAGCTGCGTCCTTGCCGATTCCTACTTCTACTTCCCCACGTGACATCCAAGCTGCTGCCGCTACTGCCGCGGCTGCAGTTGGGGCTGCAGCTGATTCTCTATCTGTGCTTGACGATACTAGCAAAAACAATTCGGTTTCAAACGATTTTGTGGACGAGGAACCTGTCTTTGACACAAACGAGTTTGTGGACGAGGAGGTTATCTTTGACATGCCCAATCTCCTTATAAATATGGCAGAAGGGATGCTGCTCAGCCCTCCTCGCTTCAATGGAACCAAAGACGAGTTCACCGCCGAAAACACTTATCACAACCTCTGGAACTATCCTTAG 600 0.52 MYYDQGHTQCSGSSAKVAAVPESPPPPGRHPIYRGVRRRSGGKWASEIREPRKTKRIWLGTFPLPEMAAVAYDVAALALKGRDAELNFPNSAASLPIPTSTSPRDIQAAAATAAAAVGAAADSLSVLDDTSKNNSVSNDFVDEEPVFDTNEFVDEEVIFDMPNLLINMAEGMLLSPPRFNGTKDEFTAENTYHNLWNYP* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01297 199 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Eupl01g01297 199 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Eupl01g01297 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 28 198 IPR045277 GO:0003700
Eupl01g01297 199 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Eupl01g01297 199 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Eupl01g01297 199 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Eupl01g01297 199 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Eupl01g01297 199 MobiDBLite consensus disorder prediction 1 16 - -
Eupl01g01297 199 MobiDBLite consensus disorder prediction 1 44 - -
Eupl01g01297 199 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Eupl01g01297 199 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Eupl01g01297 199 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01297 Eupl-Chr1 33072173 33072941 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01297 28 199 AP2-EREBP Transcription Factor Family AT2G36450 60.000 5.70e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl01g01297 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01297 - - jre:109005141 223.787