Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01274 ATGAGTGACCTAATGACGAAATCCTTCACCAGTTACATGGATCTAAAGAAAGAAGCCATCAAAGATCTAGAAGCTGGTCCCAACTACGACATGGAGATGACGGCCACCCATATGGACCCTAACCTTACCCAATTCTTAGAAGAGGCCGAAAAGGAAGCCAACGAGGAAAGCAAATCCCTGCACAAGTCCGAGGCCGTGAAAGCCCTGCGCAACAGGATCAACGTAGACATTGTAAGTGTGTTAAAGAAGACCAGGATCGTCCGCTCTACCCTGGAGGACATGGACCGGGCCAATGCCGCAAACCGGGGACTATCGGGCTACAAAGAAGAAACCCCAATCGATCGGGCGAGGACATCCGGGCTAAGGCAGAAGATGATGGCCGAGTACAAGGAGATGGTAGGGAGACGTTACTACACGGTGACGAGAGAGCACCCAGAGGAGGAGGTGATCGAGAAGATCATTTCGAATGGAGAAGGGGGCGGAGAGGATTTCCTGCAGAGAGCAATACAGGAACACGGAAGGGGGAAGGTAATTGAGACAATAGTGGAGATACAAGATAGGCGTGCGGCTGCAAAGGAGATAGAGAAGAGCTTGCTAGAGCTGCATCAGGTGTTCTTGGATATGGCGGTGATGGTGGAAGCACAGGGGGAGCAGATGGACGACATTGAGCACCATGTGATGAACGCTGCACATTACGTCAAGGGTGGGACCAAGAACCTTAAGACAAGCCAAGGAATACCATAG 744 0.5134 MSDLMTKSFTSYMDLKKEAIKDLEAGPNYDMEMTATHMDPNLTQFLEEAEKEANEESKSLHKSEAVKALRNRINVDIVSVLKKTRIVRSTLEDMDRANAANRGLSGYKEETPIDRARTSGLRQKMMAEYKEMVGRRYYTVTREHPEEEVIEKIISNGEGGGEDFLQRAIQEHGRGKVIETIVEIQDRRAAAKEIEKSLLELHQVFLDMAVMVEAQGEQMDDIEHHVMNAAHYVKGGTKNLKTSQGIP* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01274 247 PANTHER SYNTAXIN 44 242 IPR045242 -
Eupl01g01274 247 CDD SNARE_syntaxin1-like 180 242 - -
Eupl01g01274 247 SMART tSNARE_6 176 243 IPR000727 -
Eupl01g01274 247 SUPERFAMILY t-snare proteins 57 236 IPR010989 GO:0016020|GO:0016192
Eupl01g01274 247 Gene3D - 34 235 - -
Eupl01g01274 247 Pfam Syntaxin 44 119 IPR006011 GO:0016020
Eupl01g01274 247 Pfam Syntaxin 121 216 IPR006011 GO:0016020
Eupl01g01274 247 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Eupl01g01274 247 ProSitePatterns Syntaxin / epimorphin family signature. 187 227 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl01g01274 247 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01274 Eupl-Chr1 32798721 32799567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01274 1 245 SNARE and Associated Proteins AT1G08560 57.295 1.19e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01274 K08486 - vvi:100254385 352.443