Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01248 ATGAAGATGGGTATAAGGAACTACCATGTAGAGGAAATGGATTTGTGTTTTCAAGATCCAACCTTCATTGAATGGCTCAAGCCATCAACTGCTACTACCTCTCCTTCATCTTCAATAACTCAACAAACTCAGTTCACAAATCCCATGATGAGCTGCTTACAGCTACCTCTCTTTTATCAACAACAACAACAACAACAACAACAACAACAACTCCATGATCAGCAAAAGACCCAGTGCTTGCCTCTTCTAAGTAGGTTTACAGAGACTAAGCCCTTAAAAGAAGAAGAGAAGGAGAGTTTTGGTGTTAAAGATGAGAAGTTGGAGAAGGTCACTGTGACTTTGCACATTGGATTGCCAAACATAGGAGATTCTGATGGTGAGATCAATTCCTTGAACTATAAGGAAGAGAAATCCATGAAGAAGACTTGTTCTTTAAGCACTGAGAGCAGGTTTTGGATCCCCACACCAGCTCAGATCCTTATTGGGCCAACACAGTTTGCCTGTCCAGTGTGCAACAAGACCTTCAATAGGTACAACAATATGCAGATGCATATGTGGGGGCATGGATCACAATATAGAAAAGGACCGGAATCGCTTAGGGGAACACAACCAACAGCAATGTTGAGGCTACCTTGCTATTGTTGTGCTCATGGATGCAAGAACAACATCAACCATCCGCGAGCGAAGCCGTTGAAGGATTTTAGAACTCTTCAAACCCATTACAAGAGAAAGCATGGAGTGAAGCCATTCATGTGTGGAAAATGCAGCAAGTCATTTGCAGTTAGAGGAGATTGGAGAACACATGAAAAGAACTGTGGAAAGCTATGGTATTGTACATGTGGATCTGATTTCAAACATAAAAGATCACTCAAAGATCACATAAGATCATTTGGAAATGGTCACACTCCACACCCTTGTCATCATAAAAGTTTCGAAGAGGATAAGGAATGCATCACAGGGTCTGAAGAAGATGAAGTCGGCTCCGAAAGATCACAGTGA 999 0.4174 MKMGIRNYHVEEMDLCFQDPTFIEWLKPSTATTSPSSSITQQTQFTNPMMSCLQLPLFYQQQQQQQQQQQLHDQQKTQCLPLLSRFTETKPLKEEEKESFGVKDEKLEKVTVTLHIGLPNIGDSDGEINSLNYKEEKSMKKTCSLSTESRFWIPTPAQILIGPTQFACPVCNKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGVKPFMCGKCSKSFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGNGHTPHPCHHKSFEEDKECITGSEEDEVGSERSQ* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01248 332 FunFam zinc finger protein WIP2-like 165 188 - -
Eupl01g01248 332 FunFam Zinc finger protein WIP2 219 301 - -
Eupl01g01248 332 SMART c2h2final6 250 270 IPR013087 -
Eupl01g01248 332 SMART c2h2final6 213 245 IPR013087 -
Eupl01g01248 332 SMART c2h2final6 166 188 IPR013087 -
Eupl01g01248 332 Pfam Zinc finger, C2H2 type 166 185 IPR013087 -
Eupl01g01248 332 Gene3D Classic Zinc Finger 165 188 - -
Eupl01g01248 332 PANTHER ZINC FINGER PROTEIN WIP2 25 322 IPR043584 GO:0003700|GO:0010468
Eupl01g01248 332 SUPERFAMILY beta-beta-alpha zinc fingers 162 188 IPR036236 -
Eupl01g01248 332 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Eupl01g01248 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Eupl01g01248 332 SUPERFAMILY beta-beta-alpha zinc fingers 236 270 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01248 Eupl-Chr1 32484622 32487746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01248 11 319 C2H2 Transcription Factor Family AT1G08290 53.043 1.26e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl01g01248 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01248 - - ming:122059313 495.352