Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01211 ATGAAAGCTGCCGAGGATGAGGATGAGAGCGAAATACATGCTGAGCTTCTTGCCCTTCCCCCTCATGGTTCTGAGGTGTATGTTGGCGGCATTCCTCGCGATGCTTCTGAAGAGGATTTGAGGGGCTTTTGTGATTCTGCAGGGGAAGTTACTGAGGTCAGGATGATGAAAGGTAAAGATTCACGGGAGAACAAGGGCTATGCATTTGTGACCTTTAGAACAAAAGAATTGGCTGCTAAGGCTATTAAAGATCTGAATAATACTGAATTCAAGGGAAGAAAGATAAAGTGTTCAACTTCTCAAGCAAAACATCGATTGTTCATTGGTAATGTTCCAAGAAGCTGGATGGAGGAAGATCTGAAGAAGGTGGTGACAGAGGTTGGGCCTGGAGTTAATGCTGTGGAGCTGCTGAAGGATCCACAGAACTCTAGCCGTAACCGTGGCTTTGCTTTCATTGAGTATTATAACCATGCATGTGCTGAACATTCAAGGCAGAAGATGTTAAACCCAAAATTTAAGCTAGACGATAATGCTCCAACAGTGAGTTGGGCTGACCCTAAGAATGCAGATTCTTCTGCTTCACAGGTGAAGGCAATCTATGTGAAGAACTTGCCAAAAAAAATAACTCAGGATCAGTTGAGAGAGCTATTTGAACATCATGGAGAGATCACAAAAGTAGTGTTGCCGCCTGCAAAGTCCGGACAGGAGAAGAGCAGATTTGGTTTTGTGCACTTTTCAGAGAGGTCAAGTGCTATGAAGGCACTCAAAAACACTGAGAAATATGAAATCGATGGTCAAGTTCTTGAGTGTTCCCTCGCGAAGCCACAGGTCGATGGGAAAGCTAACGCAGGATCAAATTCACAGAAGTCGGCTTTGCTTCCGAGCTATCCACCTCATATGGGATATGGGTTGGTCGGGGGTGCCTATGGTGGTCTAGGTGCAAGATATGGTGCGGCGGGCTTTGCACATCCCCTTATCTATGGCAGGGGACCCACACCTGCTGGCATGGCGATGATGCCAATGCTTTTGCCTGATGGACGGATCGGATATGTCCTGCAGCAGCCGGGAGCTCAGCCGCATACACCCCCTCCACAGCAGAGGACTGGCAGCAGGAGTAGTGGCGGCTCAAGTGGGGGGAGGCAGAACAGTGACAGTGACCGTGGGCGTAGGTATCACCCATATTGA 1185 0.4802 MKAAEDEDESEIHAELLALPPHGSEVYVGGIPRDASEEDLRGFCDSAGEVTEVRMMKGKDSRENKGYAFVTFRTKELAAKAIKDLNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWMEEDLKKVVTEVGPGVNAVELLKDPQNSSRNRGFAFIEYYNHACAEHSRQKMLNPKFKLDDNAPTVSWADPKNADSSASQVKAIYVKNLPKKITQDQLRELFEHHGEITKVVLPPAKSGQEKSRFGFVHFSERSSAMKALKNTEKYEIDGQVLECSLAKPQVDGKANAGSNSQKSALLPSYPPHMGYGLVGGAYGGLGARYGAAGFAHPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGAQPHTPPPQQRTGSRSSGGSSGGRQNSDSDRGRRYHPY* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01211 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Eupl01g01211 394 SMART rrm1_1 105 182 IPR000504 GO:0003723
Eupl01g01211 394 SMART rrm1_1 25 98 IPR000504 GO:0003723
Eupl01g01211 394 SMART rrm1_1 198 271 IPR000504 GO:0003723
Eupl01g01211 394 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 295 - -
Eupl01g01211 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Eupl01g01211 394 MobiDBLite consensus disorder prediction 363 382 - -
Eupl01g01211 394 Gene3D - 187 313 IPR012677 -
Eupl01g01211 394 Gene3D - 105 185 IPR012677 -
Eupl01g01211 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 186 IPR000504 GO:0003723
Eupl01g01211 394 SUPERFAMILY RNA-binding domain, RBD 21 190 IPR035979 GO:0003676
Eupl01g01211 394 CDD RRM_SF 26 98 - -
Eupl01g01211 394 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 105 185 - -
Eupl01g01211 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Eupl01g01211 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 167 IPR000504 GO:0003723
Eupl01g01211 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Eupl01g01211 394 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 17 372 - -
Eupl01g01211 394 SUPERFAMILY RNA-binding domain, RBD 194 285 IPR035979 GO:0003676
Eupl01g01211 394 SMART rrm2_1 25 98 IPR003954 GO:0003676
Eupl01g01211 394 Gene3D - 1 104 IPR012677 -
Eupl01g01211 394 MobiDBLite consensus disorder prediction 352 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01211 Eupl-Chr1 32066138 32073559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01211 26 359 Eukaryotic Initiation Factors Gene Family AT4G34110 24.251 1.15e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01211 K13161 - nnu:104607661 620.542