Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01191 ATGTCGAAGAGGAAGGTCAGGGAACCCAAGGAGGAGAACGTGACACTTGGACCCACTGTACGAGAAGGGGAGCATGTTTTCGGTGTGGCCCACATTTTTGCATCATTCAATGATACATTTATTCATGTGACTGATTTGTCGGGAAGAGAAACCATGGTTCGCATTACTGGTGGAATGAAGGTCAAAGCTGACAGGGATGAATCTTCACCATATGCAGCCATGCTTGCAGCACAAGATGTTGCACAACGCTGCAAGGAGCTCGGCATTACTGCTCTGCATATTAAGCTTCGTGCTACTGGAGGAAATAAGACAAAGACACCTGGTCCAGGTGCCCAGTCTGCACTTAGAGCTCTTGCTCGGTCTGGAATGAGAATTGGTCGCATTGAGGATGTGACCCCGATTCCTACTGACAGCACTCGTAGAAAGGGTGGCAGAAGAGGGAGGAGGCTAGTGAGAGAGAGGGAGGAGGGAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACATTAGAGGTAGAGAGCAGTGACACCATCGACAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAACAGAGACTGATATTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTAGCTGACTACAACATCCAAAAAGAGTCTACACTGCATCTGGTTCTGAGGCTTCGAGGAGGAATTATTGAGCCTTCTTTAATGGCTTTGGCTAGAAAATATAATCAGGACAAGATGATTTGCAGGAAGTGCTATGCTCGTCTGCATCCAAGAGCCGTGAATTGCAGGAAGAAGAAGTGTGGTCATAGCAATCAGCTGAGGCCTAAGAAGAAGATCAAGTGA 861 0.4785 MSKRKVREPKEENVTLGPTVREGEHVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRLVREREEGKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01191 286 Gene3D - 153 236 - -
Eupl01g01191 286 Gene3D Ribosomal protein S11 1 150 IPR036967 GO:0003735|GO:0005840|GO:0006412
Eupl01g01191 286 CDD Ubl_ubiquitin 159 234 - -
Eupl01g01191 286 Pfam Ribosomal protein S11 28 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
Eupl01g01191 286 Gene3D - 237 286 IPR038587 -
Eupl01g01191 286 SUPERFAMILY Translational machinery components 23 148 - -
Eupl01g01191 286 ProSitePatterns Ubiquitin domain signature. 185 210 IPR019954 -
Eupl01g01191 286 ProSiteProfiles Ubiquitin domain profile. 159 234 IPR000626 GO:0005515
Eupl01g01191 286 Pfam Ubiquitin family 161 232 IPR000626 GO:0005515
Eupl01g01191 286 Hamap 30S ribosomal protein S11 [rpsK]. 3 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Eupl01g01191 286 FunFam 40S ribosomal protein S14 1 150 - -
Eupl01g01191 286 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 3 145 IPR001971 GO:0003735|GO:0005840|GO:0006412
Eupl01g01191 286 SUPERFAMILY Ubiquitin-like 151 234 IPR029071 -
Eupl01g01191 286 SMART ubq_7 159 230 IPR000626 GO:0005515
Eupl01g01191 286 Pfam Ribosomal L40e family 236 285 IPR001975 GO:0003735|GO:0005840|GO:0006412
Eupl01g01191 286 SMART Ribosomal_L40e_3 235 286 IPR001975 GO:0003735|GO:0005840|GO:0006412
Eupl01g01191 286 PRINTS Ubiquitin signature 211 232 IPR019956 -
Eupl01g01191 286 PRINTS Ubiquitin signature 169 189 IPR019956 -
Eupl01g01191 286 PRINTS Ubiquitin signature 190 210 IPR019956 -
Eupl01g01191 286 SUPERFAMILY Zn-binding ribosomal proteins 234 285 IPR011332 GO:0006412
Eupl01g01191 286 FunFam Ubiquitin-60S ribosomal L40 fusion 159 236 - -
Eupl01g01191 286 ProSitePatterns Ribosomal protein S11 signature. 115 137 IPR018102 -
Eupl01g01191 286 FunFam ubiquitin-60S ribosomal protein L40 237 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01191 Eupl-Chr1 31853644 31862590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01191 1 139 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 92.086 5.77e-93 270