Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01180 ATGGAAGATCGCCCACCTGGTTTTCGTTTCTACCCAACAGAAGAAGAGCTGGTTTCTTTCTACCTACATAACAAACTAGAAGGGATGAGAAAGGACTTAGACCGTGTTATCCCTGTTGTAGACATTTATGAGCTTGATCCATGGCACCTCCCACAGATTTCGGGAGAGGTGTGTAATAGAGACCCTGAGCAGTGGTTTTTCTTCACACCCAGACAAGAAAGAGAAGCCCGAGGAGGGAGACCGAACCGAACCACGAGTTCAGGATACTGGAAAGCTACAGGCTCTCCTGGTTATGTTTACTCATCTGGTAACCGAGTTATCGGTTTGAAGAAAACAATGGTTTTCTACAAAGGAAAAGCTCCTACTGGAAGAAAAACCAAATGGAAGATGAATGAGTACAGAGCCATTGAAGGAGAAGCTACAGCATCAAGTAGTGTAATACCAAAGCTACGACACGAATTCAGCCTGTGTCGAGTGTATGTGAAATCTGGTTGTTTGCGAGCATTCGATCGTCGTCCATCTGGAGCCACAACAAGTATTGAGACTACCCCAATTCAACAAATAATTCACGGGGATGGAGCCACAACATCTCATCAGAACCCTCCGACCACAGAAAAAACCAGCTCACCTGATAGTTCGTCTTCCGGAGCTCATGCATTTCAGACTGGAGAAGCTGCTGATTGGGAGATGGCTGAAGATCTCAACCCTCTATGGGAATGGGAGCAATTGAATTGGTTCTAA 741 0.4561 MEDRPPGFRFYPTEEELVSFYLHNKLEGMRKDLDRVIPVVDIYELDPWHLPQISGEVCNRDPEQWFFFTPRQEREARGGRPNRTTSSGYWKATGSPGYVYSSGNRVIGLKKTMVFYKGKAPTGRKTKWKMNEYRAIEGEATASSSVIPKLRHEFSLCRVYVKSGCLRAFDRRPSGATTSIETTPIQQIIHGDGATTSHQNPPTTEKTSSPDSSSSGAHAFQTGEAADWEMAEDLNPLWEWEQLNWF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01180 246 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Eupl01g01180 246 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 206 - -
Eupl01g01180 246 MobiDBLite consensus disorder prediction 175 219 - -
Eupl01g01180 246 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Eupl01g01180 246 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Eupl01g01180 246 SUPERFAMILY NAC domain 4 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01180 Eupl-Chr1 31749687 31751825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01180 7 245 NAC Transcription Factor Family AT5G22380 56.432 9.97e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl01g01180 NAM 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01180 - - nnu:104607634 394.43