Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01178 ATGTTTCAAGAAGATTTCTGGATGATCGGCGCAGCCTCGCCGTCTCTCTCCCCTTGGTCCCGTCTCCAAGACAAGCTATTCGAGCGAGCTCTCGTGATTTTCCCCGAGGAAACCACAGATCGATGGCAAAAAATCGCCAGCCATGTCCCTGGAAAGACACCACCGGAGATCCGGGAGCACTACGAGGCTTTGCTTCACGACATATCGGAGATCGATTCCGGGCGAGTTGAATTACCGTATTACGAGGATAACTCGTTCTCGCGGAGTTGGAATTCCGAGTGCGGGACGAGTCATATCTCGTTCGGGTCGAAGTCGAAGCAGACCGATACGGAGAGAAGGAAAGGGATTCCCTGGTCCGATGAAGAGCACAGGCTTTTTCTAATTGGACTGAATAAATACGGGAAGGGGGATTGGAGGAGTATTTCAAGAAATGCTGTGGTGTCGAGAACGCCAACCCAAGTTGCTAGCCATGCTCAGAAGTACTATCTTCGTCTAAACTCGGTAAAGAAAGAGAAGAAGAGGTCCAGCATCCATGATATGACCTGTGTCGAAAACAGCTCCGTTGCACAACATGACGATCATAGTTTGGTAGTTGAGCCATCGGCCCCTGCTCTTCAGCAATCAATGGCGACACCAAGATCGTTTTCCGATCATGTAGTCTCTGCAGGGTATCAAGGCTTTGGATTTCTTACGTAA 696 0.4986 MFQEDFWMIGAASPSLSPWSRLQDKLFERALVIFPEETTDRWQKIASHVPGKTPPEIREHYEALLHDISEIDSGRVELPYYEDNSFSRSWNSECGTSHISFGSKSKQTDTERRKGIPWSDEEHRLFLIGLNKYGKGDWRSISRNAVVSRTPTQVASHAQKYYLRLNSVKKEKKRSSIHDMTCVENSSVAQHDDHSLVVEPSAPALQQSMATPRSFSDHVVSAGYQGFGFLT* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01178 231 ProSiteProfiles Myb-like domain profile. 17 65 IPR001005 -
Eupl01g01178 231 SMART sant 114 164 IPR001005 -
Eupl01g01178 231 SMART sant 15 67 IPR001005 -
Eupl01g01178 231 ProSiteProfiles Myb-like domain profile. 110 162 IPR001005 -
Eupl01g01178 231 Pfam Myb-like DNA-binding domain 117 161 IPR001005 -
Eupl01g01178 231 CDD SANT 18 65 IPR001005 -
Eupl01g01178 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 166 IPR017930 -
Eupl01g01178 231 CDD SANT 117 161 IPR001005 -
Eupl01g01178 231 NCBIfam myb-like DNA-binding domain, SHAQKYF class 114 164 IPR006447 GO:0003677
Eupl01g01178 231 FunFam Transcription factor SRM1 11 78 - -
Eupl01g01178 231 Gene3D - 116 169 - -
Eupl01g01178 231 Gene3D - 12 78 - -
Eupl01g01178 231 FunFam transcription factor MYB1R1 116 167 - -
Eupl01g01178 231 ProSiteProfiles SANT domain profile. 118 166 IPR017884 -
Eupl01g01178 231 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 198 IPR043363 -
Eupl01g01178 231 SUPERFAMILY Homeodomain-like 111 167 IPR009057 -
Eupl01g01178 231 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01178 Eupl-Chr1 31728246 31731570 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl01g01178 Myb_DNA-binding 7.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01178 - - nnu:104589256 302.367