Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01162 ATGATAAACCCAACAGCAAACACCTTATCCTCCAAATACAAAGGCGTAATCCCTCAACCCAATGGTCGCTGGGGCGCCCAAATCTACGAGAACCAACACCGACTCTGGCTCGGTACCTTCGACACCGAAGAAGCCGCTGCCCGCTCCTACGACCGCGCCGCTGCAATGTTCCGCGGTCCAGATGCCACCCTCAATTTCCAAACAAACGAAGACGATAGTAACTACGAAGAACAGCAACGACATGAATCAATCACAGAAGTAATCGAAGAAGACGAAGAAGAAGATAGAGAACGCATGTTCGAGAAGCCATTAACGCCGAGCGACGTGGGTAAACTCAACCGCCTCGTCATACCCAAACAACATGCCGAAAAATACTTCCCAATCGGTGGTGACTCGGGATTGTTACTGAGTTTCGAGGACGAGTCAGGGAAACCTTGGAGGTTTCGTTACTCTTATTGGAACAGTAGTCAAAGCTACGTGTTGACTAAAGGTTGGAGCCGTTTCGTTAAGGAGAAGCAACTCGACGCCGGCGACATCGTCATGTTCGAGCGCCTCCGGCTAGACGGACAGCGACTATTTATAAGGTGGAGACGTCGCCCCGCACCGGTGCAAGATAGCGAAGTGGCGCAGGGAGTGACAACTGCTACAGCAGCGTGGACCCGGGCCTTCTATTCTGCACCACCTTATCTTGAGCTCCCTCATGGGCCTCAATTATACCAACCTGACTGCCTCCATGCAGTTGAGCCCGTCGTTCAAAACCGGATAACAACGCCGGGAAACTGGAAGCGGCTAAGACTGTTTGGGGTGAACCTGGATTGCCAAATCGATGGGTCCGAGCCATCTAGCACCAATTGTTCGTCCTTGTCGAGCCATGGCCGAGCCCACATCGTATACTCGCAAGCTCATGGTTCTAATCAGAATACTCACAAGGAGTTCAATTTGTCGCGAGATGTCAGCCAAAAGAGAAATTGCCGAGGAGATTTGTCGATGTGA 993 0.5156 MINPTANTLSSKYKGVIPQPNGRWGAQIYENQHRLWLGTFDTEEAAARSYDRAAAMFRGPDATLNFQTNEDDSNYEEQQRHESITEVIEEDEEEDRERMFEKPLTPSDVGKLNRLVIPKQHAEKYFPIGGDSGLLLSFEDESGKPWRFRYSYWNSSQSYVLTKGWSRFVKEKQLDAGDIVMFERLRLDGQRLFIRWRRRPAPVQDSEVAQGVTTATAAWTRAFYSAPPYLELPHGPQLYQPDCLHAVEPVVQNRITTPGNWKRLRLFGVNLDCQIDGSEPSSTNCSSLSSHGRAHIVYSQAHGSNQNTHKEFNLSRDVSQKRNCRGDLSM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01162 330 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
Eupl01g01162 330 SUPERFAMILY DNA-binding pseudobarrel domain 95 200 IPR015300 -
Eupl01g01162 330 CDD AP2 11 67 IPR001471 GO:0003700|GO:0006355
Eupl01g01162 330 FunFam AP2 domain-containing protein RAP2.8 11 68 - -
Eupl01g01162 330 ProSiteProfiles AP2/ERF domain profile. 12 67 IPR001471 GO:0003700|GO:0006355
Eupl01g01162 330 Pfam B3 DNA binding domain 100 199 IPR003340 GO:0003677
Eupl01g01162 330 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 10 287 IPR044800 GO:0003700
Eupl01g01162 330 CDD B3_DNA 99 190 IPR003340 GO:0003677
Eupl01g01162 330 SMART rav1_2 12 73 IPR001471 GO:0003700|GO:0006355
Eupl01g01162 330 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Eupl01g01162 330 Gene3D - 94 207 IPR015300 -
Eupl01g01162 330 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700|GO:0006355
Eupl01g01162 330 SMART B3_2 100 200 IPR003340 GO:0003677
Eupl01g01162 330 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Eupl01g01162 330 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Eupl01g01162 330 ProSiteProfiles B3 DNA-binding domain profile. 100 199 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01162 Eupl-Chr1 31495213 31498597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01162 10 202 RAV Transcription Factor Family AT1G68840 52.766 1.94e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Eupl01g01162 B3 2.2e-30 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01162 K09287 - nnu:104589469 397.512