Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01157 ATGGAAATCAGTACCATGGCGGTGGTCTCTACTCTGTTTCCTGGTTTTAAATTTTCTCCTTCAGACGAACAACTGATTTCTTATTATCTGAAGCGAAAGATGGAGGGTTTGGAGAAGAGCGTTGAAGTGATTCCGGAGGTTGATATCTGTAAATTCGAACCTTGGGACTTACCAGCCAAATCCATCATTCAGTCAGATCATGAGTGGTTCTTCTTTTCTCCTCGGGGCAGGAAATACCCAAATGGCTCACAAACTAGGAGGACAACTGAAGTTGGTTACTGGAAAGCAACCGGGAAAGAGCGTGACATAAATTCAAGTTCCAGTGAGATTGGTACGAAGAGGACACTTGTGTTCCACATGGGCCGTGCACCGAAAGGGGAGAGAACAGACTGGATAATCCATGAGTATTGTTTGAAAGGAAACAGGTTTGATGGGTGTCAGGATTTTTTTTCTGTATGTCGCCTTCGAAAGAAGCATGATTTAAGTGTGAAGAATGACAGCCCAAATGATGAGTCAGAGAGTCATATGGGTTTACCACCTATAAATGTTGGTCTTTGTTCCGCATCCCAAGTTGGTAGTGATATTCAGCATTCACAAATGGGAGTGTGTGGAGAGGCAATGGAATGCTGCTCAAAGAATCAAAGTAGCGGTTTAGTTTTTCCTTCCGTCGAACAGTCTGATTCTACATCTGAATCAGTTCAGAAACAACATAATGAATCATGTTCTCCCACGCTTGTGTCCGCGATCAGCCAGGAGGCTCATGATACGAAGTCCTTAGAAGAGGACTGTTTTGCTGACATATTGAAAGATGATATAATTAAGCTTGATTACTCCTCACTGCCCAGAACTCCGTCGCTATTGCCATTACCATTGCCCATAGTTGCTGAGAAAGCTGTGACTAGGAGAATATCTGAACAGCCAGTTGACATGTGCATGTCACGGATGCAGGCTTTGCAGGGCACTGCACACAGAAGGATCAGATTGAAAATTCAGAGACCAGGGCATTATCTTCCAGAGACATTGGAAGTCGGTGGTGAGGGCTCTGCAGCAACAGTTATACAGGGCAATGCAACGCGGAGTGTAAAAGACTTGAAGAGCAAATTCTCAGTTTGTTCAATCAACTGTCGGGTGGTACTTACGGTATCGGTTATCATGACTTTGCTGGTTTTGTTTCTGTTGCTGCTTAGAGGAACCTTGTATTTCAAAATGGTCAAATCTATTATCAAGTTGTAA 1233 0.4355 MEISTMAVVSTLFPGFKFSPSDEQLISYYLKRKMEGLEKSVEVIPEVDICKFEPWDLPAKSIIQSDHEWFFFSPRGRKYPNGSQTRRTTEVGYWKATGKERDINSSSSEIGTKRTLVFHMGRAPKGERTDWIIHEYCLKGNRFDGCQDFFSVCRLRKKHDLSVKNDSPNDESESHMGLPPINVGLCSASQVGSDIQHSQMGVCGEAMECCSKNQSSGLVFPSVEQSDSTSESVQKQHNESCSPTLVSAISQEAHDTKSLEEDCFADILKDDIIKLDYSSLPRTPSLLPLPLPIVAEKAVTRRISEQPVDMCMSRMQALQGTAHRRIRLKIQRPGHYLPETLEVGGEGSAATVIQGNATRSVKDLKSKFSVCSINCRVVLTVSVIMTLLVLFLLLLRGTLYFKMVKSIIKL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01157 410 Gene3D NAC domain 21 162 IPR036093 GO:0003677|GO:0006355
Eupl01g01157 410 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Eupl01g01157 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 237 - -
Eupl01g01157 410 ProSiteProfiles NAC domain profile. 12 158 IPR003441 GO:0003677|GO:0006355
Eupl01g01157 410 Pfam No apical meristem (NAM) protein 14 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01157 Eupl-Chr1 31438769 31444828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01157 8 288 NAC Transcription Factor Family AT2G27300 45.745 3.87e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl01g01157 NAM 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01157 - - tss:122659604 326.635