Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01140 ATGATGAAGTGGGGCATGGAAATTCTCTCTCCAGCATATCTTTCCAACTCGAATTGGTTTCTTGAAGAGACCAAGAGCACAAAATGGACCCACGAAGAGAACAAGCGATTTGAGAATGCTCTGGCAGAATATGATAAGGACACTCCTGATCGATGGCAGAAGGTTGCGGACATGATCCCCGGAAAGACCGTGATGGAAGTGATCAAGCAGTACGAAGAATTGGAAGTTGATGTTAGCAATATAGAAGCAGGGCTGATCCAAATTCCTAGCTATACCACATCCTCCTTTACATTGGAGTGGGTGAACAATCGCGGGTTTGGCTCTGGTGGAAAGAAGTCGTCCTCTGCTAGGCCTTCTGATCAGGAAAGGAAGAAAGGGGTCCCATGGACAGAAGAAGAGCACAGGTTGTTTCTGATGGGTCTTAAAAAGTATGGTAAAGGGGACTGGAGAAATATCTCCCGGAATTACGTCGTCTCTAGAACCCCGACTCAAGTGGCTAGCCATGCTCAGAAGTACTTTATCAGGCAGCTTTCGGGAGGTAAAGATAAGAGAAGATCAAGCATCCATGATATCACAACCATAAATCTCACGGACACTACACCTCCGTCACCAGACAATAATAGGCATCCTTCTCCAGATCATTCTACCGTGCTTCACCAGCAACCTAATCGTGCCAGCGCACCCAAAGCACTATTTGATCGGAATCAGCCCCACGATGGAGCAGCCATGGTTTTTAGCCCAACACATGGGAACTTGTTTGTGCCACCTTCTTATGGGATAACTTCGTATGGGCTCAAACTGCAGGGGCAAAATCTGCACAGAGGTGCTCTTCATGGATCTCATGTTGGACCACACAGTACACTATTTCAGATGCATTCCTCACAGCGCCACCCTTATGGACAAGGCAGCAGTTTATTCAGTCCTTAA 927 0.4703 MMKWGMEILSPAYLSNSNWFLEETKSTKWTHEENKRFENALAEYDKDTPDRWQKVADMIPGKTVMEVIKQYEELEVDVSNIEAGLIQIPSYTTSSFTLEWVNNRGFGSGGKKSSSARPSDQERKKGVPWTEEEHRLFLMGLKKYGKGDWRNISRNYVVSRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITTINLTDTTPPSPDNNRHPSPDHSTVLHQQPNRASAPKALFDRNQPHDGAAMVFSPTHGNLFVPPSYGITSYGLKLQGQNLHRGALHGSHVGPHSTLFQMHSSQRHPYGQGSSLFSP* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01140 308 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Eupl01g01140 308 SUPERFAMILY Homeodomain-like 123 176 IPR009057 -
Eupl01g01140 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 230 IPR043363 -
Eupl01g01140 308 FunFam transcription factor MYB1R1 127 178 - -
Eupl01g01140 308 Gene3D - 127 177 - -
Eupl01g01140 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 124 176 IPR006447 GO:0003677
Eupl01g01140 308 SUPERFAMILY Homeodomain-like 24 74 IPR009057 -
Eupl01g01140 308 MobiDBLite consensus disorder prediction 184 225 - -
Eupl01g01140 308 MobiDBLite consensus disorder prediction 107 128 - -
Eupl01g01140 308 CDD SANT 28 74 IPR001005 -
Eupl01g01140 308 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Eupl01g01140 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 177 IPR017930 -
Eupl01g01140 308 Pfam Myb-like DNA-binding domain 128 173 IPR001005 -
Eupl01g01140 308 Pfam Myb-like DNA-binding domain 28 71 IPR001005 -
Eupl01g01140 308 CDD SANT 128 173 IPR001005 -
Eupl01g01140 308 MobiDBLite consensus disorder prediction 190 223 - -
Eupl01g01140 308 FunFam Transcription factor SRM1 21 88 - -
Eupl01g01140 308 SMART sant 25 77 IPR001005 -
Eupl01g01140 308 SMART sant 125 175 IPR001005 -
Eupl01g01140 308 ProSiteProfiles SANT domain profile. 129 177 IPR017884 -
Eupl01g01140 308 Gene3D - 21 88 - -
Eupl01g01140 308 ProSiteProfiles Myb-like domain profile. 121 173 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01140 Eupl-Chr1 31188914 31191655 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl01g01140 Myb_DNA-binding 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01140 - - psom:113310121 456.832