Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01138 ATGGTTTCGTTGAAGTTGCAGAAGCGGCTCTCCGCAAGCGTTCTGAAGTGCGGAAGAGGGAAGGTTTGGCTCGACCCTAATGAAGTCAACGAGATCTCCATGGCCAATTCCAGGCAAAACGTTAGAAAGCTGGTCAAGGATGGCTTCATAATAAGGAAGCCAACGAAGATTCACTCTCGGTCTCGTGCACGCCGAATGAAGGAGGCTAAAAGGAAGGGGCGCCACTCTGGATACGGTAAACGCAAGGGTACAAGGGAGGCAAGGCTGCCCACAAAGATTCTCTGGATGAGGAGGATGCGGGTTCTTAGGCGATTGCTGCGCAAGTACAGGGAGTCAAAGAAGATCGACAAGCACATGTACCATGACATGTACATGAAGGTGAAGGGTAATGTCTTTAAAAACAAGCGGGTGCTGATGGAGAGCATACACAAGTCGAAAGCTGAGAAGGTGAGAGAGAAGACTCTGGCTGACCAGTTTGAGGCGAAGCGAGCTAAGAACAAAGCCAGCAGGGAAAGGAAGCATGCCAGGAGGGAGGAGCGTTTGGCTCAGGGCCCAGTAGAGAGAGCACCAGCGGCAACACCTGCACTTCAACCAGCCGAGGGAACTAAGAAAGGCAAGAAGTGA 624 0.5176 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKVREKTLADQFEAKRAKNKASRERKHARREERLAQGPVERAPAATPALQPAEGTKKGKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01138 207 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Eupl01g01138 207 MobiDBLite consensus disorder prediction 158 184 - -
Eupl01g01138 207 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Eupl01g01138 207 MobiDBLite consensus disorder prediction 158 207 - -
Eupl01g01138 207 MobiDBLite consensus disorder prediction 57 85 - -
Eupl01g01138 207 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Eupl01g01138 207 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Eupl01g01138 207 Gene3D - 57 188 - -
Eupl01g01138 207 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Eupl01g01138 207 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Eupl01g01138 207 FunFam Ribosomal protein L19 1 56 - -
Eupl01g01138 207 PANTHER 60S RIBOSOMAL PROTEIN L19 1 187 IPR039547 GO:0003723|GO:0003735|GO:0022625
Eupl01g01138 207 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Eupl01g01138 207 MobiDBLite consensus disorder prediction 57 79 - -
Eupl01g01138 207 FunFam Ribosomal protein L19 57 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01138 Eupl-Chr1 31159577 31162214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01138 1 207 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.810 2.44e-123 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01138 K02885 - ming:122085408 375.17