LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g01122	ATGGCAGCGAGCGAGCAAACGGTGTTGCAGTTCTTCCCTTCGTCGACGAGCTTGTCTGCGAAGGTTCACCCCGTCGTCATCTTCAACATCTGCGATTGCTACGTTAGGCGCCCAGATCAAGCAGAAAGAGTGATCGGTACTCTTCTCGGTTCGATCTCCCCAGATGGCACCGTCGATATTCGGAACTCGTATGCGGTTCCTCACAACGAGTCTTCCGATCAGGTTGCGTTGGATATTGATTACCATCATAACATGTTGCTGTCTCACCAAAAGGTGAATCCAAAGGAAGTCATTGTCGGATGGTATTCAACAGGCTTTGGGGTCTCAGGGGGGAGTGCATTGATCCATGAATTCTATTCAAGAGAAGTACAAAACCCAGTTCATTTGACTGTCGATACGGGATTCAGGAATGGAGAAGCTACCATCAAAGCTTTCGTTTCTGTCAACTTGTCTCTGGGAGATCGGCAGCTTGCCGCACAATTTCAAGAAACTCCTCTGGATCTGCGGATGGTTGAAGCAGAGCGAGTTGGATGTATGAATTTGTCCTCTCACTGTGGTTCCTGTTTTTACTTGAGCTCATTCATCATTGTTGCCTCTTTATGCATGGTTGATATTCTAAAGACGACAATGGTAGACAAGCTCCCTAATGATTTGGAAGGAATGGAAGCCTCAATGGAGAGACTGCTTGCTCTTATTGACGATGTCTACAAATATGTTGACAATGTTGTGGAACGGCGTGTTGCACCAGACAATAACACTGGAAGATTCATATCAGAAACTGTAGCTTCCGTACCAAAAATGTCAGCTGCAGCTTTTGATAAGCTAGTAAATGACAATCTTCAGGACCATTTACTACTACTATATTTGTCAAGCCTCACAAGGACGCAGCTTGGCTTAGCAGAGAAGTTGAACACAGCTGCTCAGATTCTTTAA	933	0.4544	MAASEQTVLQFFPSSTSLSAKVHPVVIFNICDCYVRRPDQAERVIGTLLGSISPDGTVDIRNSYAVPHNESSDQVALDIDYHHNMLLSHQKVNPKEVIVGWYSTGFGVSGGSALIHEFYSREVQNPVHLTVDTGFRNGEATIKAFVSVNLSLGDRQLAAQFQETPLDLRMVEAERVGCMNLSSHCGSCFYLSSFIIVASLCMVDILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVDNVVERRVAPDNNTGRFISETVASVPKMSAAAFDKLVNDNLQDHLLLLYLSSLTRTQLGLAEKLNTAAQIL*	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl01g01122	310	Hamap	Eukaryotic translation initiation factor 3 subunit F [EIF3F].	18	306	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Eupl01g01122	310	CDD	MPN_eIF3f	21	303	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Eupl01g01122	310	FunFam	Eukaryotic translation initiation factor 3 subunit F	9	185	-	-
	Eupl01g01122	310	ProSiteProfiles	MPN domain profile.	20	151	IPR037518	-
	Eupl01g01122	310	Pfam	Maintenance of mitochondrial structure and function	208	303	IPR024969	-
	Eupl01g01122	310	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	14	307	-	-
	Eupl01g01122	310	SMART	pad1_6	19	150	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Eupl01g01122	310	Gene3D	Cytidine Deaminase, domain 2	11	185	-	-
	Eupl01g01122	310	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	18	124	IPR000555	GO:0005515\|GO:0008233\|GO:0008237

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g01122	Eupl-Chr1	30989409	30998755	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g01122	2	310	Eukaryotic Initiation Factors Gene Family	AT2G39990	70.253	5.66e-150	421

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl01g01122	K03249		-	nnu:104610487	483.411