Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01122 ATGGCAGCGAGCGAGCAAACGGTGTTGCAGTTCTTCCCTTCGTCGACGAGCTTGTCTGCGAAGGTTCACCCCGTCGTCATCTTCAACATCTGCGATTGCTACGTTAGGCGCCCAGATCAAGCAGAAAGAGTGATCGGTACTCTTCTCGGTTCGATCTCCCCAGATGGCACCGTCGATATTCGGAACTCGTATGCGGTTCCTCACAACGAGTCTTCCGATCAGGTTGCGTTGGATATTGATTACCATCATAACATGTTGCTGTCTCACCAAAAGGTGAATCCAAAGGAAGTCATTGTCGGATGGTATTCAACAGGCTTTGGGGTCTCAGGGGGGAGTGCATTGATCCATGAATTCTATTCAAGAGAAGTACAAAACCCAGTTCATTTGACTGTCGATACGGGATTCAGGAATGGAGAAGCTACCATCAAAGCTTTCGTTTCTGTCAACTTGTCTCTGGGAGATCGGCAGCTTGCCGCACAATTTCAAGAAACTCCTCTGGATCTGCGGATGGTTGAAGCAGAGCGAGTTGGATGTATGAATTTGTCCTCTCACTGTGGTTCCTGTTTTTACTTGAGCTCATTCATCATTGTTGCCTCTTTATGCATGGTTGATATTCTAAAGACGACAATGGTAGACAAGCTCCCTAATGATTTGGAAGGAATGGAAGCCTCAATGGAGAGACTGCTTGCTCTTATTGACGATGTCTACAAATATGTTGACAATGTTGTGGAACGGCGTGTTGCACCAGACAATAACACTGGAAGATTCATATCAGAAACTGTAGCTTCCGTACCAAAAATGTCAGCTGCAGCTTTTGATAAGCTAGTAAATGACAATCTTCAGGACCATTTACTACTACTATATTTGTCAAGCCTCACAAGGACGCAGCTTGGCTTAGCAGAGAAGTTGAACACAGCTGCTCAGATTCTTTAA 933 0.4544 MAASEQTVLQFFPSSTSLSAKVHPVVIFNICDCYVRRPDQAERVIGTLLGSISPDGTVDIRNSYAVPHNESSDQVALDIDYHHNMLLSHQKVNPKEVIVGWYSTGFGVSGGSALIHEFYSREVQNPVHLTVDTGFRNGEATIKAFVSVNLSLGDRQLAAQFQETPLDLRMVEAERVGCMNLSSHCGSCFYLSSFIIVASLCMVDILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVDNVVERRVAPDNNTGRFISETVASVPKMSAAAFDKLVNDNLQDHLLLLYLSSLTRTQLGLAEKLNTAAQIL* 311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01122 310 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 306 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl01g01122 310 CDD MPN_eIF3f 21 303 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl01g01122 310 FunFam Eukaryotic translation initiation factor 3 subunit F 9 185 - -
Eupl01g01122 310 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Eupl01g01122 310 Pfam Maintenance of mitochondrial structure and function 208 303 IPR024969 -
Eupl01g01122 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 307 - -
Eupl01g01122 310 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Eupl01g01122 310 Gene3D Cytidine Deaminase, domain 2 11 185 - -
Eupl01g01122 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl01g01122 Eupl-Chr1 30989409 30998755 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01122 2 310 Eukaryotic Initiation Factors Gene Family AT2G39990 70.253 5.66e-150 421
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01122 K03249 - nnu:104610487 483.411