Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01118 ATGGAAGAAGGAGCTTGTTCCGGGTTCGGACTTTTAGATAGTAATCCTCATTTGTTTCTACCCACTCCGCCCTTAACGGCCATAGAGAGGTTTCTGTGGAGTCCAAACGAATTCTCGCATATAGAGATCCCCAGAAGTCATTCGAAGAAGGGAGAAACACTCGTTTCTGCAAATGGGTTTTGTGAATTTTCGTCTTCTCGTGGTGCAATCGATGGTTTTGCAAGTGGGTTGTCGTTGCCGAGTCTTCAAGATATGAGCTTCGTTGATGAGTTGTTTGTAGATGTCGAGTCTCTTAACTGGACGCAGGTGAGGCATAATAGTGTGGATTTGAGAGGAGAAGTGAAACTGGGAGAGAAGAACATAGTAGGGTTGGGGAAGAGAGTGAAAGGTGGTTCTTCTGCAACTTTGATAAAAGGACAGTGGACAGATGAAGAGGACAGCTTGCTGGTTAAATTGGTGAAGCAGTATGGTGTGCGGAAATGGGCTCAGATTGCTCAGAAGTTGGTAGGTCGGGCTGGGAAGCAGTGTAGAGAAAGATGGCATAATCATCTACGCCCTGATATCAAGAAGGATACATGGAGTGAAGAAGAAGAGAGACTGTTAGTCGAAGCCCATGAGAAGGTTGGGAACAGATGGGCAGAGATTGCAAAGCGAATTCCCGGAAGAACCGAAAACACGATAAAGAACCACTGGAATGCCGCGAAAAGAAGGCAGAATTCAAGAAGAAAGAACAAAAAGGCAGTTATCCAAGGAGGAAAATCTCAGCCATCTGTACTACAAGAGTACATCAGAAGCAAGAGCATCAAGAACACGGCCTTCACTCCCATTTCCACCACCATTACCACTGGATCCAGCCTCTCTACAAACCCTTCAAACCAATTCAATGTTATGCTTCATGAGCCATCGAGTCCTCGTTTACCGATGATTCTCCAACACAGCTGGTTGCCCATACCTACGACGATGAATTACTCTTCATACAAAAATTCTTTGAAAACACATACAAACAGCCATCAGCCAGCACAATCGTAG 1029 0.4519 MEEGACSGFGLLDSNPHLFLPTPPLTAIERFLWSPNEFSHIEIPRSHSKKGETLVSANGFCEFSSSRGAIDGFASGLSLPSLQDMSFVDELFVDVESLNWTQVRHNSVDLRGEVKLGEKNIVGLGKRVKGGSSATLIKGQWTDEEDSLLVKLVKQYGVRKWAQIAQKLVGRAGKQCRERWHNHLRPDIKKDTWSEEEERLLVEAHEKVGNRWAEIAKRIPGRTENTIKNHWNAAKRRQNSRRKNKKAVIQGGKSQPSVLQEYIRSKSIKNTAFTPISTTITTGSSLSTNPSNQFNVMLHEPSSPRLPMILQHSWLPIPTTMNYSSYKNSLKTHTNSHQPAQS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01118 342 ProSiteProfiles Myb-like domain profile. 133 184 IPR001005 -
Eupl01g01118 342 SMART sant 189 237 IPR001005 -
Eupl01g01118 342 SMART sant 137 186 IPR001005 -
Eupl01g01118 342 PANTHER MYB PROTEIN-RELATED 120 261 - -
Eupl01g01118 342 Pfam Myb-like DNA-binding domain 141 201 - -
Eupl01g01118 342 Gene3D - 137 189 - -
Eupl01g01118 342 ProSiteProfiles SANT domain profile. 188 239 IPR017884 -
Eupl01g01118 342 Gene3D - 192 253 - -
Eupl01g01118 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 239 IPR017930 -
Eupl01g01118 342 FunFam Transcriptional activator Myb isoform A 137 190 - -
Eupl01g01118 342 CDD SANT 192 232 IPR001005 -
Eupl01g01118 342 ProSiteProfiles Myb-like domain profile. 185 235 IPR001005 -
Eupl01g01118 342 CDD SANT 141 184 IPR001005 -
Eupl01g01118 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 188 IPR017930 -
Eupl01g01118 342 SUPERFAMILY Homeodomain-like 136 231 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01118 Eupl-Chr1 30896643 30898476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01118 23 295 MYB Transcription Factor Family AT5G11050 43.007 5.07e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl01g01118 Myb_DNA-bind_6 2.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01118 K09422 - nnu:104597325 376.326