Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01113 ATGGCGTCCACCAGCGTTTCTTCGTACCGAGATCGGACGTCTGAATTCCGTTCATTGTCAGAAAGATTGAAGAAGGTCGAAGGAATCGGAGCCGTAAACGCAACGGCAAATGATCCGGAGACATCAAAAGCAGCGGTATCTGTCTTATCTCAATCTGAATTCCAAAGGAAGGCATCGAAAATCGGTTTGGGGATCCACGAAGCATCTCAGAAAATCTCTAGGCTTGCTAAGTTGGCAAAGAGGTCGTCTATGTTCGATGATCCGCTCATGGAAATACAAGAACTTACCGCCTTGATAAAGAATGACATTACAGTGCTGAACATGGCAGTTTCAGATTTGCAAGCCCTTCAAAACTTGGAAATAGCCGATGGGAACTGTTCCAAGGATAGAGTTGTTCATGCAACTACCATTTGTGATGACCTGAAGAACAGACTTATGGGAACTACAAAACAGTTTCAAGAAGTATTAACTACAAGGACAGAGAACCTCAAGGCCCATGAAAACAGGAAACAGATCTTCTCCACAAATGCATCAAGAGAGAATCCATTTCTGAATCACACAAAAACTGTGACTGAACCACCTCCTTGGTCAAATACATCAAATGCATCAGGCATTTTACCATCACCATCAATGCCCACAAATGGAGCTCAAAGTGGCAACCAACTGAGACGAAGGTTAGCTGCAGACAGCACTACATCCCACCATATGGAAGTGTCCATGCTACAGCAGGTTGTTCCAAGGCAAGAGAATTATAGTCAAAGCAGGGCTGTTGCTCTTCAAAATGTGGAGTCCACGATTTCCGAACTCAGTGGAATATTTACACATTTGGCGACAATGGTTGCACAGCAAGGGGAATTGGCCATCAGGATTGATGATAACATGGACGAGTCATTGACCAATGTGGAAGGTGCCCGAGGTGCTCTTCTGAAGCATTTGAACCAAATATCCTCAAACCGGTGGCTTCTAATCAAGATATTTGCCATTCTGATCTTTTTCCTGATGGTATTTATCATCTTTGTGATTTAA 1026 0.4357 MASTSVSSYRDRTSEFRSLSERLKKVEGIGAVNATANDPETSKAAVSVLSQSEFQRKASKIGLGIHEASQKISRLAKLAKRSSMFDDPLMEIQELTALIKNDITVLNMAVSDLQALQNLEIADGNCSKDRVVHATTICDDLKNRLMGTTKQFQEVLTTRTENLKAHENRKQIFSTNASRENPFLNHTKTVTEPPPWSNTSNASGILPSPSMPTNGAQSGNQLRRRLAADSTTSHHMEVSMLQQVVPRQENYSQSRAVALQNVESTISELSGIFTHLATMVAQQGELAIRIDDNMDESLTNVEGARGALLKHLNQISSNRWLLIKIFAILIFFLMVFIIFVI* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01113 341 Gene3D - 47 304 - -
Eupl01g01113 341 SUPERFAMILY t-snare proteins 51 304 IPR010989 GO:0016020|GO:0016192
Eupl01g01113 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Eupl01g01113 341 SMART tSNARE_6 244 311 IPR000727 -
Eupl01g01113 341 Pfam SNARE domain 286 337 IPR000727 -
Eupl01g01113 341 CDD SNARE_syntaxin5 252 337 - -
Eupl01g01113 341 MobiDBLite consensus disorder prediction 183 233 - -
Eupl01g01113 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl01g01113 341 PANTHER SYNTAXIN 52 333 IPR045242 -
Eupl01g01113 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 25 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01113 Eupl-Chr1 30804383 30826094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01113 7 340 SNARE and Associated Proteins AT5G05760 63.988 1.51e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01113 K08490 - nnu:104596962 520.39