Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01098 ATGAACCTTTGCTGCTTCGGTGCATTGAAATCGTGTAAAGGGAAGAATGCTCGCACTTCAGGACAGGCAGAAGAGCTCACTACCAGCAATGTCAGGCTATTTTCCTATAACATGTTGAGGTCTGCAACAGGGAACTTCCATCCATCAAACAGATTAGGTGGAGGCGGCTTCGGAATTGTCTATAGAGGAGTTTTAAGGGATGGAACCCAAGTTGCGGTTAAGTCTCTTTCTGCTGGTTCGGAACAAGGAACACATGAGTTTTTAACTGAGATTGACATGATATCAAATGTTCGACATCCAAACCTGGTTCAACTCATTGGGTGTTGTATCGAGGGAAGTAATCGAATGTTGGTATACGAGTATCTGGAGAATAACAGTCTTGCAAGTGCTTTACTTGGTCCAAAGAGTAAACAGATTACTCTGGATTGGCCTAAAAGAGCTGCTATCTGCATTGGTACGGCTCGAGGGCTTGCATTTCTTCACGAGGAAGCCGATCCGCATATTGTCCACCGAGATATCAAGGCTAGTAATATACTTCTTGATGGAGACTTGAATCCAAAAATTGGAGATTTTGGGCTGGCAAAACTTTTTCCAGACAATGTCACTCATGTTAGTACGCGAGTGGCAGGAACTATTGGTTATCTGGCACCGGAGTATGCCTTATTAGGACAGCTGACGAAAAAGGCCGATATCTACAGTTTTGGGGTGCTTATACTTGAAATAATCAGTGGCAGAAGTAGTAGTAAGTCAGCATGGGGGGAGGATATGATGATTCTTGTGGAATGGTCTTGGAAACTGCGAGGTGAAGGTAGGCTCTTGGACATTGTGGATCCAGAACTGGTAGACTATCCAGAGGATGAGGTGGTGCACTTTATCAAGGTGGCACTCTTCTGCACTCAAGCAGCATCACAGCAGAGGCCTTCCATGAAGCAGGTAGTGCAGATGCTCTCCAAAGAGATGACCCTCAATGAGAAGGCGCTAACCCAGCCCGGTGTCTACAAGGGTCATACTGCCCGAAAATCAGCTGGCAGTAGCTCACAGGAGAGCTCTTCATCTCAGGTGAGCAAAGGCAAACAATCGATAAATCCGTTCACGACTTCAACGCGTTTAAACAGCTCTTCTGAAAGCATGACAGTGATGCAGCCCAGGTGA 1152 0.4601 MNLCCFGALKSCKGKNARTSGQAEELTTSNVRLFSYNMLRSATGNFHPSNRLGGGGFGIVYRGVLRDGTQVAVKSLSAGSEQGTHEFLTEIDMISNVRHPNLVQLIGCCIEGSNRMLVYEYLENNSLASALLGPKSKQITLDWPKRAAICIGTARGLAFLHEEADPHIVHRDIKASNILLDGDLNPKIGDFGLAKLFPDNVTHVSTRVAGTIGYLAPEYALLGQLTKKADIYSFGVLILEIISGRSSSKSAWGEDMMILVEWSWKLRGEGRLLDIVDPELVDYPEDEVVHFIKVALFCTQAASQQRPSMKQVVQMLSKEMTLNEKALTQPGVYKGHTARKSAGSSSQESSSSQVSKGKQSINPFTTSTRLNSSSESMTVMQPR* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01098 383 FunFam cold-responsive protein kinase 1 17 121 - -
Eupl01g01098 383 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Eupl01g01098 383 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 354 - -
Eupl01g01098 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Eupl01g01098 383 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g01098 383 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Eupl01g01098 383 SMART serkin_6 46 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g01098 383 MobiDBLite consensus disorder prediction 339 383 - -
Eupl01g01098 383 CDD STKc_IRAK 52 318 - -
Eupl01g01098 383 MobiDBLite consensus disorder prediction 327 383 - -
Eupl01g01098 383 Pfam Protein tyrosine and serine/threonine kinase 49 316 IPR001245 GO:0004672|GO:0006468
Eupl01g01098 383 SUPERFAMILY Protein kinase-like (PK-like) 24 316 IPR011009 -
Eupl01g01098 383 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Eupl01g01098 383 PIRSF TyrPK_CSF1-R 124 382 - -
Eupl01g01098 383 PIRSF TyrPK_CSF1-R 49 131 - -
Eupl01g01098 383 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01098 Eupl-Chr1 30613694 30619832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01098 34 334 Receptor kinase-like Gene Family AT1G53420 53.642 1.18e-109 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Eupl01g01098 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01098 - - cpap:110807720 574.704