Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01097 ATGAATCCTCTGACGTTGGTGAAACGTATACAGAAGATAAATTCAAGAGAAGCAGCGTTAGGGATTTCCGAAGGAGCTTCATGGCATGCCAAATATAAAGAATCAGCTTATGTCTTTGTTGGTGGCATTCCGTTCGATCTCACCGAAGGTGATCTCCTCGCGGTTTTTGCCCAGTATGGGGAGATTGTTGATGTTAATCTTGTTAGAGATAAGGCTACTGGTAAATCCAAAGGATTTGCCTTTATAGCATATGAGGATCAGAGAAGTACAAATCTTGCTGTAGATAATTTGAATGGAGCCAGTGTTCTCGGTCGGATTATAAGGGTTGATCATGTTACTAATTACAAAAAGAAAGAAGAAGAGGATGAAGAGAAAGAGCAGCAGAAAAGGGAGGCACGAGGTGTATGTCGAGCTTTCCAAAAAGGTGAATGTAACCGTGGAGCATCATGCAAATTTTCTCATGATGAGCAAAGATGTGCAAACACAGGTTGGGGTCCCAAGGATGGCAGTTCAAGATGGGAACACGACAAGCATGAGGGTCCATCAAATAGCCACAAAAGATCTGGTAACATCTCATCAGATCGCGTCCCAGAGTCTCATTTTAAGGAACAAGGTTCGAGGTTTAGATCGGATGATAAAGGTGTGAGAATGTCCAGAGCAGAGGACAGTGAGGGGGACAGGAAGAACCACCCTAAGCAAAGTGAAATGAATCCAAGGGATCAGGACAAGCGAGTCATAGAGAAACTGTCAGAAATGTATAAGGAACCAAATCACAAAGACTGGGATAGGCGAGCTCCTGAGAGAAGGTCAGTAAAGCATGAGTCTGAACCACGCACAAGGGAAGATCGTGATAGAAGAGAAAGGGAGGAGAGGTCAGGAAGGTACGAGTCAGAAGAACCAAATCCAAGAGAAGATCGTGATAGGAGAGGAAGGGAGGACAGGTCAAGAAGGCATGAATCAGAACCAAACCCAAAAGAAGATAGAGATCAGAGGGGAAGTGAGAAAAGATCAAGGTATGATAGGGACTCTTCCTCCCATCGGCGCAGAGAGGAAGAGGAAATGCAGTACCGGAAATCACGTAGGTAA 1086 0.4457 MNPLTLVKRIQKINSREAALGISEGASWHAKYKESAYVFVGGIPFDLTEGDLLAVFAQYGEIVDVNLVRDKATGKSKGFAFIAYEDQRSTNLAVDNLNGASVLGRIIRVDHVTNYKKKEEEDEEKEQQKREARGVCRAFQKGECNRGASCKFSHDEQRCANTGWGPKDGSSRWEHDKHEGPSNSHKRSGNISSDRVPESHFKEQGSRFRSDDKGVRMSRAEDSEGDRKNHPKQSEMNPRDQDKRVIEKLSEMYKEPNHKDWDRRAPERRSVKHESEPRTREDRDRREREERSGRYESEEPNPREDRDRRGREDRSRRHESEPNPKEDRDQRGSEKRSRYDRDSSSHRRREEEEMQYRKSRR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01097 361 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Eupl01g01097 361 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Eupl01g01097 361 CDD RRM_ist3_like 27 115 IPR045844 GO:0000398|GO:0003723
Eupl01g01097 361 Gene3D - 127 211 - -
Eupl01g01097 361 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Eupl01g01097 361 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Eupl01g01097 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Eupl01g01097 361 SMART rrm1_1 37 110 IPR000504 GO:0003723
Eupl01g01097 361 MobiDBLite consensus disorder prediction 191 361 - -
Eupl01g01097 361 Gene3D - 11 126 IPR012677 -
Eupl01g01097 361 Coils Coil 115 135 - -
Eupl01g01097 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Eupl01g01097 361 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 285 - -
Eupl01g01097 361 MobiDBLite consensus disorder prediction 155 361 - -
Eupl01g01097 361 MobiDBLite consensus disorder prediction 169 184 - -
Eupl01g01097 361 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Eupl01g01097 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01097 Eupl-Chr1 30604575 30613338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01097 38 111 Eukaryotic Initiation Factors Gene Family AT4G34110 29.730 1.30e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01097 K13107 - nnu:104601247 423.32