Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01092 ATGAAGGCTGCCAAGGGGAAGGGGGCAGTGAGGAAGGAAAAAAAGGAAGTGTTGAAGCCTGTTGAGGACAGGAAGGTTGGGAAGCGAAAGGCTGCTATTAAGGCAGATAAGAGTAGCAAAAGACAGACCAAGAAGGAAAAATTGGCCAAGAAAGACCCTAACAAACCAAAGAGGCCTCCTAGTGCTTTCTTCGTGTTCCTGGAGGAATTCAGAAAGACTTACAAACTAGAGCATCCTAATGTGAAGGCTGTCTCAGCTGTTGGGAAAGCTGGAGGAGAGAAGTGGAAATCCTTGTCTGATGCTGAGAAAGCTCCATACGAAGCTAAAGCTGCTAAAAGGAAGACTGAGTATGAAAAGCTTATGACCGCCTATAACAAGAAACAGGAAAGTATGGCTGATGATGACGACGATGATGTAGAGTCTGACAAATCAAAGTCTGAGGTGAATGATGAAGATGACGAAGAAAGCGGAGAGGAAGAGGAGGATGACGATGACGATGACGATGACGACGATTGA 516 0.4554 MKAAKGKGAVRKEKKEVLKPVEDRKVGKRKAAIKADKSSKRQTKKEKLAKKDPNKPKRPPSAFFVFLEEFRKTYKLEHPNVKAVSAVGKAGGEKWKSLSDAEKAPYEAKAAKRKTEYEKLMTAYNKKQESMADDDDDDVESDKSKSEVNDEDDEESGEEEEDDDDDDDDDD* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01092 171 MobiDBLite consensus disorder prediction 133 171 - -
Eupl01g01092 171 MobiDBLite consensus disorder prediction 95 132 - -
Eupl01g01092 171 MobiDBLite consensus disorder prediction 9 57 - -
Eupl01g01092 171 SMART hmgende2 55 126 IPR009071 -
Eupl01g01092 171 SUPERFAMILY HMG-box 47 128 IPR036910 -
Eupl01g01092 171 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 56 125 IPR009071 -
Eupl01g01092 171 MobiDBLite consensus disorder prediction 1 61 - -
Eupl01g01092 171 MobiDBLite consensus disorder prediction 89 171 - -
Eupl01g01092 171 Gene3D High mobility group box domain 37 141 IPR036910 -
Eupl01g01092 171 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 161 IPR031061 -
Eupl01g01092 171 Pfam HMG (high mobility group) box 56 125 IPR009071 -
Eupl01g01092 171 CDD HMG-box_AtHMGB1-like 57 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01092 Eupl-Chr1 30559210 30563017 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Eupl01g01092 HMG_box 1.5e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01092 K25507 - vvi:100246802 224.557