Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01090 ATGCGAAAGTTATTCAAGGATTCCCTCAAAGCGCTCGAAGCCGATATCCAACACGCCAATACTCTGGCTTCGGATTATCCGAGGGAATACAATGGTGGCTGCCTTCAGATGAGATTATCTTATAGTCCAGCTGCACACTTGTTCCTTTTCCTTGTTCAATGGACTGATTGTCAACTTGCTGGTTCCCTGGGATTTCTGAGGATCCTTGTTTATAAGGCTTATGTGGATGGCAAGACCACTATGTCTATTCATGAAAGGAAAGTTAGCATTAGAGAGTTTTATGCTGTGATATTTCCCTCTTTATTGCAACTTCATAGAGGAATCTCCGATGTAGAGGATCGGAAACAGAGAGAGGTTTGTGCTGCCAAGTACAAAAAAAAGAATGAGATAGAAAAGGGCAAACTCTCTGAACTTGATATAGAGAGAGAAGAGGAGTGTGGGATTTGCATGGAGATGAACAGTAAGGTTGTCTTGCCCAATTGCAACCACGCATTGTGTATGAAGTGCTACCGGGATTGGCGTGCACGGTCTCAATCGTGCCCCTTTTGTCGGGATAGCCTCAGAAGAGTGAACTCAAGTGACCTTTGGATCTACACTGACAACCGTGAGATTGTGGACATGTCCGCAATCTGCAGGGAAAATTTAAAGAGGCTGTTCATGTACATAGATAAGTTGCCTCTTATCATTCCAGATCCCATGTTTCTTTCCTATGATTCTCATGTCAGGTGA 729 0.4362 MRKLFKDSLKALEADIQHANTLASDYPREYNGGCLQMRLSYSPAAHLFLFLVQWTDCQLAGSLGFLRILVYKAYVDGKTTMSIHERKVSIREFYAVIFPSLLQLHRGISDVEDRKQREVCAAKYKKKNEIEKGKLSELDIEREEECGICMEMNSKVVLPNCNHALCMKCYRDWRARSQSCPFCRDSLRRVNSSDLWIYTDNREIVDMSAICRENLKRLFMYIDKLPLIIPDPMFLSYDSHVR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01090 242 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Eupl01g01090 242 SMART ring_2 146 183 IPR001841 -
Eupl01g01090 242 PANTHER RING FINGER PROTEIN 41, 151 4 238 - -
Eupl01g01090 242 SUPERFAMILY RING/U-box 129 188 - -
Eupl01g01090 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Eupl01g01090 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Eupl01g01090 242 FunFam RING/U-box superfamily protein 124 193 - -
Eupl01g01090 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01090 Eupl-Chr1 30520688 30525202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01090 94 201 C3H Transcription Factor Family AT5G01960 27.434 1.88e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01090 K25840 - nnu:104601255 434.106