Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01068 ATGGAAGTGGCTTCATTTCCTTCGAGTCCGCGAACGGTTGAAGAGATCTTCAAGGATTACAGCGGGCGAAGGGCTGGGATCGTTCGAGCTTTAACCCACGACGTCGATGAGTTCTACGCGCTTTGTGATCCAGAGAAGGAGAATTTGTGTCTGTACGGACACCCGAATGAGAACTGGGAAGTCACTCTACCAGCAGAGGAAGTTCCTCCGGAGCTTCCGGAGCCAGCGTTAGGGATCAATTTCGCGAGAGACGGAATGAACCGTAAGGACTGGCTTTCACTGGTTGCCGTGCACAGCGATTCTTGGTTGCTCTCCGTGGCTTTCTATCTCGGGGCCCGCTTTAATCGCAATGAAAGGAAACGTTTATTTAGCCTGATCAACGATCTGCCCACTGTCTTTGAAGTTGTAACAGAAAGGAAGCCTGTAAAAGACAAGCCAAGTGTTGATAGTGGAAGTAAATCCAGACTCAGCACAAAGAGATCGAGTGATGGGCAGGTGAAAAGCAATTCAAAGCCAACTGATGAGGTTTATGGGGATGAAGACGATGAACACAGTGAAACCCTCTGTGGGAGTTGTGGGGGTAATTACAATGCCAGCGAGTTTTGGATTGGGTGTGATATCTGCGAGAGGTGGTACCATGGTAAGTGTGTGAAGATAACACCTGCCAAAGCTGAGAATATAAAGCAGTACAAATGTCCATCTTGCAGTGGCATGAAAAGAGGAAGGCAGTAG 732 0.485 MEVASFPSSPRTVEEIFKDYSGRRAGIVRALTHDVDEFYALCDPEKENLCLYGHPNENWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARFNRNERKRLFSLINDLPTVFEVVTERKPVKDKPSVDSGSKSRLSTKRSSDGQVKSNSKPTDEVYGDEDDEHSETLCGSCGGNYNASEFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCSGMKRGRQ* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01068 243 SUPERFAMILY FYVE/PHD zinc finger 178 237 IPR011011 -
Eupl01g01068 243 ProSiteProfiles Zinc finger PHD-type profile. 186 238 IPR019787 -
Eupl01g01068 243 SMART PHD_3 188 236 IPR001965 -
Eupl01g01068 243 CDD PHD_AL_plant 188 236 IPR044104 -
Eupl01g01068 243 MobiDBLite consensus disorder prediction 143 182 - -
Eupl01g01068 243 FunFam PHD finger alfin-like protein 181 237 - -
Eupl01g01068 243 Pfam Alfin 12 137 IPR021998 GO:0006355|GO:0042393
Eupl01g01068 243 Pfam PHD-finger 189 236 IPR019787 -
Eupl01g01068 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 236 IPR013083 -
Eupl01g01068 243 ProSitePatterns Zinc finger PHD-type signature. 189 235 IPR019786 -
Eupl01g01068 243 PANTHER CPG BINDING PROTEIN 9 239 IPR045104 GO:0006355|GO:0042393
Eupl01g01068 243 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01068 Eupl-Chr1 30097211 30106257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01068 3 243 Alfin-like Transcription Factor Family AT5G05610 77.686 2.46e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Eupl01g01068 Alfin 2.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01068 K26274 - nnu:104602591 459.529