Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01063 ATGTGCAGTGGTTCAAAGAGGAAACTATCTCCCACCAATTTCGTCATGGAGGGCGAATTCCAGAAGCAGAAAGAGGGGATCTTGTGTAACTGTTCGATTTCGCTCGAATTATCTGCCTCAGACGACTTGATTGGCTTCAGACGTATGGTGGAAGAAGAGGGTTCCGACGTCGATGAAGCAGGCTTCTGGTATGGGAGTGCGATCGGATTGAGAAAGATGGGGTTTGAGGAGAGAACGCCTCTCATGATTGCTGCCTTGTTCGGGAGCATGGAGGTGTTGAAGTATATAATTGCGACCGACCGGGTTAATGTCAACAGGGCCTGTGGTTCGGATGGGGCAACTGCCCTCCACTGTGCTGCTGCTGGTGGGTCTGCGGCTTCTCCAGAGATCGTTAGACTTTTGCTTGATGCTTCAGCGGATGCTAATTCTGTTGATGCTAATGGAAACCGACCTGGAGACCTAATTGCTCCACTTTTGAATTCTGCTTGCAATTCAAGAAAAAAGACACTGCAGATGTTGCTAAAAGGCTGTAGTACTAGTAGTATTGGGGAAGTAGGGGTTTCTTCTGATGAAATCATTAACCAACCAGAAGAACAGCAACAGCAGTTGCAAACCCCCCAGTTTTCAAAAGATGGGGTGGAGAAGAAAGAGTATCCGATTGATCTGTCTCTACCAGACATAAAGCATGGGATCTATGGGACAGATGAATTTAGGATGTACACATTCAAGGTGAAGCCTTGCTCAAGGGCGTACTCCCATGACTGGACGGAGTGCCCATTTGTCCACCCAGGGGAGAATGCAAGGAGGCGTGACCCACGGAAATACCACTACAGCTGCGTCCCATGCCCAGAGTTCCGAAAGGGGACATGCCGGCAGGGAGACGCCTGCGAGTATGCGCATGGTGTGTTCGAATGCTGGCTCCACCCGGCACAGTATCGAACTCGACTTTGCAAGGATGAGACTGGATGCAACCGAAGGGTGTGCTTCTTTGCTCACAAGCCTGAAGAGCTACGCCCATTATATGCTTCCACAGGGTCAGCTGTGCCATCGCCTAGATCGTCTTCTGCCAACGTTTCTTCCCTGGACATGTCAGCTATGAGCCCCCTGGCGCTTGGATCCCCATCTGTCCTGATGCTTCCTACCTCAACACCTCCCATGTCTCCCTCAGCAGCCACATCCTCTCCCATGGGAGGAGCGGTGTGGCAGAATCAATCTGGTCTCATCCCACCTACCTTGCAGCTCCCTGGTAGCCGGCTCAAGACCGCATTGAGTGCCAGAGATATTGATTTAGACATGGATTTGCTTGGGCTTGAAGGTCATCATCATCACCATCACCACCACCACCATCAGCAACAGCAACAATTGATGGACGAGATCTCAAATCTTTCGTCCCAGTCAAGCTGGTCCAACACCTTGGCCACTGCTGCAGCCTTTGCAGCTTCGTCTGGTGGTCGAACTGTGGATTACAGTCGACTTGGCGGGGTAAAGCCTACAAACCTTGATGATGTGTTTGGATCACTTGATCCTTCTGTACTGTCTCAATTACAAGGACTCTCTCTGAAAGCTGCTGGGTCTCAGTTGCAGTCTCCAACTGGAATCCAGATACGCCAGAACTTGAATCAGCAGCTCCGGTCTAGCTACCCTTCAAACCTGTCTTCCTCCCCAGTGAGGACAACACCATCATTTGGGCTCGATCCATCTGGGTCAGGCACAGCGGCAGCGGCAGCAGCTGCGGCGGTCATGAATTCAAGATCTACTGCCTTTGCAAAGCGGAGCCAGAGCTTCATTGATCGCAGTGCAGTGAACCATCATCCTGGGCTCACTGCCTCAGGGACTTCTCCAACTGTGATGTCATCTACTTATTCTGATTGGGGCTCACCAGGTGGGAAATTAGACTGGGGAATTCAAGGAGAAGAGCTGAACAAGCTGAGGAAGTCAGCATCGTTTGGGCTCCGAAGCAGCAACAGCAGCAGCAGTATTGCAACAGCCACAGCATCAATGGTTCACACCATGGACGAACCGGATGTGTCTTGGGTGCAATCTCTAGTGAAGGATGCCCCGCCGGTAGGGGCTGGGCGGTTTAGTTTGGAGGATTATCAGCAGCAGCAACAGTATCATCTCAACAGTGGGGGCTCTGAGATGCTCCCACCATGGGTGGAGCAGCTGTACATGGAGCAGGAGCAGATGGTGGCTTAA 2196 0.5159 MCSGSKRKLSPTNFVMEGEFQKQKEGILCNCSISLELSASDDLIGFRRMVEEEGSDVDEAGFWYGSAIGLRKMGFEERTPLMIAALFGSMEVLKYIIATDRVNVNRACGSDGATALHCAAAGGSAASPEIVRLLLDASADANSVDANGNRPGDLIAPLLNSACNSRKKTLQMLLKGCSTSSIGEVGVSSDEIINQPEEQQQQLQTPQFSKDGVEKKEYPIDLSLPDIKHGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGVFECWLHPAQYRTRLCKDETGCNRRVCFFAHKPEELRPLYASTGSAVPSPRSSSANVSSLDMSAMSPLALGSPSVLMLPTSTPPMSPSAATSSPMGGAVWQNQSGLIPPTLQLPGSRLKTALSARDIDLDMDLLGLEGHHHHHHHHHHQQQQQLMDEISNLSSQSSWSNTLATAAAFAASSGGRTVDYSRLGGVKPTNLDDVFGSLDPSVLSQLQGLSLKAAGSQLQSPTGIQIRQNLNQQLRSSYPSNLSSSPVRTTPSFGLDPSGSGTAAAAAAAAVMNSRSTAFAKRSQSFIDRSAVNHHPGLTASGTSPTVMSSTYSDWGSPGGKLDWGIQGEELNKLRKSASFGLRSSNSSSSIATATASMVHTMDEPDVSWVQSLVKDAPPVGAGRFSLEDYQQQQQYHLNSGGSEMLPPWVEQLYMEQEQMVA* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01063 731 FunFam Zinc finger CCCH domain-containing protein 66 234 302 - -
Eupl01g01063 731 MobiDBLite consensus disorder prediction 545 565 - -
Eupl01g01063 731 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Eupl01g01063 731 ProSiteProfiles Zinc finger C3H1-type profile. 281 303 IPR000571 GO:0046872
Eupl01g01063 731 SMART ANK_2a 76 106 IPR002110 GO:0005515
Eupl01g01063 731 SMART ANK_2a 111 143 IPR002110 GO:0005515
Eupl01g01063 731 Gene3D - 71 217 IPR036770 -
Eupl01g01063 731 SMART c3hfinal6 276 302 IPR000571 GO:0046872
Eupl01g01063 731 SMART c3hfinal6 311 334 IPR000571 GO:0046872
Eupl01g01063 731 PANTHER UNKEMPT FAMILY MEMBER 36 686 IPR045234 -
Eupl01g01063 731 Pfam Ankyrin repeats (3 copies) 69 144 IPR002110 GO:0005515
Eupl01g01063 731 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Eupl01g01063 731 SUPERFAMILY Ankyrin repeat 74 174 IPR036770 -
Eupl01g01063 731 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 301 IPR000571 GO:0046872
Eupl01g01063 731 Gene3D - 276 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01063 Eupl-Chr1 30038382 30041865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01063 35 726 C2H2 Transcription Factor Family AT5G12850 38.798 3.44e-146 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl01g01063 Ank_2 2.5e-09 CL0465