Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01060 ATGACTTCGAACGCAGAGTATCCGACACCGGCGGCGGTAGAATCCATCCACCGCTCTCTTTCGGAAATTTGCAGTGTCCCCGACGAAAACTACTCATGGGAAAATCCTAGGCGGTTTTCCGGTTATGCCAAGCGGCTTCAGCTGGTTTTGAACCAGTTGCTCAGATCATCACCGGAAAATCTCTCCCCGTCCATACAAACAGCCTTGAAAGGAATCGCCGGAGACCTGACGAAATCCGGCGAGACGTTATCGGTTTACCGGCAAAAAAGTAAAATCTACATCCTCATCAACTGTCGAGTCCTGTGCGCATCTCTCCAGGAGCGCTCGATTGCAATAGGAGGATGGCTGGCTTTGCTCGATTCTGATCTTCTCGACAATCCGGACCTCCACAAAAAAACCACCGATCTCTCCGGAGAAATGAAGCAAGCTCAGTTTAGAGTGACGGAGAACGAAGAGAGGGTATGCTGTACCCTTCAGAAAGAGGGGAAAGATAGGCAAACCAGTAAAGCAGTCCAGAGTGCTATTATCATGGATTTAGCTCGCGCCCTAGGAATCGACACCGAGAACCAAATCGAACTAGGGGAACAGATCAAGCTCTTGAAGAACGATGTTGTCGGCTCGAATTCAGTTGTCGAGAGGCGGATTTTAATGTCTCTGGAGAAAATCTTTGATAATTGGTCGATGGAGCCAAACATCGCAAGTCGAGGCTTTGATCTTGAGTTTGAAGAGGATGCACAGATTCCAACTTTCAAGAACTTCCTCTGCCCATTGACGAAGGATGTAATGAAGGATCCGGTCGTTCTGGAATCTTATCAGACTTACGAGCGGACTGCAATTGAATACTGGTTGGAGCGATGTATAGAGGACGGTCGCGATCCGACATGTCCGGTTACCGGACAAGTCCTCAAGTCCTTGGAGAAGAAACCAAACATTGGCCTTGCGGGAGCAATTGAAGAGTGGGTTAATAGGAATGTTGAAATCCAGATCCAATCGGCCGTGCAGTACCTTAGTGGGGATTCTCCTCCTCCGGTGGATTGCATTGAACGTGTGTTGGATAATATTTATAAGATCTCTGAGGAGCATCCCTCGAGCAGATACAGAATAAGAAATGCGGGGATTGTAATTCTCATTGTTAAGATGCTGAAGAACAGTTCAAAGAGTATCGGGTCACATTTGAGAAGCAAAGCACTTATGGCTTTGCTCAGCATTGCCAAGGATGAAGAGAGCAGGCTAAGAATGCTTGAAGAGGGCATGACTAGATTGGCTATACATAGTCTAATTGGAAGCTCGGAAAGAGAGAGAGAGTATGCTGTGAAGTTAATACTTGAGTTTTCAAGTGATGAAGCTTATTGTGCGAAAATTGCATCGGAGAAAGGGGCATTAGTTCTTCTCTCAAGCATGGCAGGAAATTTGGAGCATCCTGCTTTATCTAATCTAGCTGAGGAGGTCTTAAAGAGGATGGAGAAGGTGGAGCATAATGTTCAACATTTGGCAGCTGCAGGAAGATTTGAACCTTTACTTAGTCGACTCTGTGAAGGTACTGATGATGTTAGAATAGCAATGGCATCATTGGTTGGAAAGATGACATTGACAAACAGCAGTAAAGAACAAATTGCCAGGCAAGGTGCTAAAATACTTGTTGACATGCTATCCAAGCCAGAGGGAAGGACACCAAGCTTGCAAGCTTTGTACAATCTGTCGACCTTGGACGACAATGCTACTATTCTTGTTGATTCGGGCGTGCTTACGTCCCTTACAGATATTCTTTTCAAAACCCCGGATGACCCACAAGATTTGAAGGGATTGGCAGCATCAACAATAGCAAATATAGTCTCAAAGCCAGGGCATTGGGAATTAGCATCTGTCAACAAGGAAGGGATTTCGATGCAGTCAGAATCTATTGTCTATAACCTTTTGGAGCTTCTATCTGTTGCATCTCCAAATGGTCAAGTTGCTGTTCTCCAGATCCTTTATGGAATTGCATCTTCTCCCCAGGCATCAGAGTCTGTAGCCACCCATATAAATTCGGGTAGTGGCATAATGACCATTATACCATTTCTCGAACACCCCGAAGTTGGCCATAGAATTTATGCCTTGAGGCTTACGAGAATCCTTTCTAAAAGGTTGGGGCAAGTTCTAGTTAATGAGCTGAGAGCTTCTAACAACATTCCCTTATTGAAAGACAAGCTATTGGACACCCAATGCACAGATGGAGAGAGATCCGAAGCTGCATGCATACTTGCCAATCTTCCCCTAACGGATGATGAGGTGAAAACAGTCCTAGGGAGTAGTCTTGTACGATGGATAGTCACTACTCTCAAAGAGCGGCGTCGGAGCTCCAGCGAGAGGACCTCCCGATCCACTTGCATGGTGGAAGGGCTTCTTGGTCTGTTACTGCATTTTGCAAGATGCCCTGACCCGACAATCCTGGACACAATTCAAGAGCATCAGCTATTGACGGTCTTCCGGGAGCAACTGGGCTTTTCCTCACAACCAAGAGTAAAGCAGAGAGCTGCCCTTGGGTTGAAGTATTTGTCCGAGTGCCAAAGTGCACTTGTCGCATCTGCAGACTTGGAACCCCAACCTCCCCATGGTTTCTGCTCTTCCATGATATTAGTGTGTGGGAAGGCACCAAAGGTCCCGCCAACGTGTCCCATACACTCTGCCCGATGTGAGGAGGGCAGTCAGTTTTGCTTGCTAAAGGGAAATTGCATCAAGCCCCTGGTTGATCTTCTGAATGACGAAGACACCAAGGTTCAGATCGCGGCAGTGGAGGCACTGTCCACACTCGTGTCTGATACATCTTACGGTCTCAAGCGGGCTGTCGAAGAACTTGAACGGCTCGGTGTGATCGATGCTGTGATTGCTTTGTTCACAGAGGTCCGGGGAGGGGAGCTTCTAGAGAGAACAATTTGGATGGTGGAGAGGGTATTGAGAGTGGAAAGCCATGTTCAACGACACTCAGTTGATCAGACTCTAGTAAAGGCATTGGTGGAAGCTTTTAAGCACGGGAATGCCAACACGAAGAGACACGCTCAGGATGCTCTGACCAATTTGAAACAGCTGTCAGGAGTCAGTGGGAAGAACTCGAGTCAACAGACTCGTGGACGACAATTAGGTACTGACCGTTGA 3132 0.4706 MTSNAEYPTPAAVESIHRSLSEICSVPDENYSWENPRRFSGYAKRLQLVLNQLLRSSPENLSPSIQTALKGIAGDLTKSGETLSVYRQKSKIYILINCRVLCASLQERSIAIGGWLALLDSDLLDNPDLHKKTTDLSGEMKQAQFRVTENEERVCCTLQKEGKDRQTSKAVQSAIIMDLARALGIDTENQIELGEQIKLLKNDVVGSNSVVERRILMSLEKIFDNWSMEPNIASRGFDLEFEEDAQIPTFKNFLCPLTKDVMKDPVVLESYQTYERTAIEYWLERCIEDGRDPTCPVTGQVLKSLEKKPNIGLAGAIEEWVNRNVEIQIQSAVQYLSGDSPPPVDCIERVLDNIYKISEEHPSSRYRIRNAGIVILIVKMLKNSSKSIGSHLRSKALMALLSIAKDEESRLRMLEEGMTRLAIHSLIGSSEREREYAVKLILEFSSDEAYCAKIASEKGALVLLSSMAGNLEHPALSNLAEEVLKRMEKVEHNVQHLAAAGRFEPLLSRLCEGTDDVRIAMASLVGKMTLTNSSKEQIARQGAKILVDMLSKPEGRTPSLQALYNLSTLDDNATILVDSGVLTSLTDILFKTPDDPQDLKGLAASTIANIVSKPGHWELASVNKEGISMQSESIVYNLLELLSVASPNGQVAVLQILYGIASSPQASESVATHINSGSGIMTIIPFLEHPEVGHRIYALRLTRILSKRLGQVLVNELRASNNIPLLKDKLLDTQCTDGERSEAACILANLPLTDDEVKTVLGSSLVRWIVTTLKERRRSSSERTSRSTCMVEGLLGLLLHFARCPDPTILDTIQEHQLLTVFREQLGFSSQPRVKQRAALGLKYLSECQSALVASADLEPQPPHGFCSSMILVCGKAPKVPPTCPIHSARCEEGSQFCLLKGNCIKPLVDLLNDEDTKVQIAAVEALSTLVSDTSYGLKRAVEELERLGVIDAVIALFTEVRGGELLERTIWMVERVLRVESHVQRHSVDQTLVKALVEAFKHGNANTKRHAQDALTNLKQLSGVSGKNSSQQTRGRQLGTDR* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01060 1043 SMART Ubox_2 252 320 IPR003613 GO:0004842|GO:0016567
Eupl01g01060 1043 Gene3D - 489 859 IPR011989 -
Eupl01g01060 1043 SMART arm_5 569 612 IPR000225 GO:0005515
Eupl01g01060 1043 SMART arm_5 806 847 IPR000225 GO:0005515
Eupl01g01060 1043 SMART arm_5 531 568 IPR000225 GO:0005515
Eupl01g01060 1043 SMART arm_5 891 932 IPR000225 GO:0005515
Eupl01g01060 1043 SMART arm_5 361 405 IPR000225 GO:0005515
Eupl01g01060 1043 ProSiteProfiles U-box domain profile. 248 327 IPR003613 GO:0004842|GO:0016567
Eupl01g01060 1043 Gene3D - 325 488 IPR011989 -
Eupl01g01060 1043 SUPERFAMILY ARM repeat 328 667 IPR016024 -
Eupl01g01060 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 324 IPR013083 -
Eupl01g01060 1043 MobiDBLite consensus disorder prediction 1020 1043 - -
Eupl01g01060 1043 Pfam U-box domain 252 324 IPR003613 GO:0004842|GO:0016567
Eupl01g01060 1043 CDD RING-Ubox_PUB 253 306 IPR045210 -
Eupl01g01060 1043 SUPERFAMILY ARM repeat 638 1019 IPR016024 -
Eupl01g01060 1043 SUPERFAMILY RING/U-box 243 324 - -
Eupl01g01060 1043 Coils Coil 480 500 - -
Eupl01g01060 1043 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 1027 - -
Eupl01g01060 1043 Gene3D - 889 1036 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01060 Eupl-Chr1 29973915 29988154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01060 250 1027 U-box Gene Family AT1G76390 30.625 1.65e-97 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01060 - - tss:122651742 1497.26