Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01024 ATGGCCTCGCAAGACTCTCAACCCTTCCACTGGCACTACGCCGAGCTCGACGACAAGAACTTCCAAATCCACGGCCGAAGCCTCCTCCTCGTAGTCATCATCTTCTGTTTCCTCCTCCTCTTCACCCTCCTATCCCTCTACCTCAGATGGGTATGTCGCTATCGCCGCCTCTCCGCCACCGCTGCTGCTATCCCTACCAGCACCCCACACCCTGCTGTTCCATTGGCTAGGTCAGTGGGACCGGGGCTCGACCCTGCCACCATTAATAGCTTGCCAATCTTCCTACACCGCTCGTCAACGTCGGACACCACCACCATGGATGAAGCCCAGTGTTCTATATGCCTTACGATATTCGAAGACGAAGAGAAGGTTAAGGTCTTGCCTGATTGTCACCACGGTTATCACCCCGAGTGCGTTGATAAGTGGCTCAGTACTCAGTCGAGTTGCCCACTCTGTCGAGCGTCTCTCCGAGTCGACTCAGCTGTTCACTGA 492 0.5549 MASQDSQPFHWHYAELDDKNFQIHGRSLLLVVIIFCFLLLFTLLSLYLRWVCRYRRLSATAAAIPTSTPHPAVPLARSVGPGLDPATINSLPIFLHRSSTSDTTTMDEAQCSICLTIFEDEEKVKVLPDCHHGYHPECVDKWLSTQSSCPLCRASLRVDSAVH* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01024 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 158 IPR013083 -
Eupl01g01024 163 Pfam Ring finger domain 110 153 IPR001841 -
Eupl01g01024 163 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 160 - -
Eupl01g01024 163 SUPERFAMILY RING/U-box 100 158 - -
Eupl01g01024 163 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Eupl01g01024 163 FunFam E3 ubiquitin-protein ligase ATL6 74 159 - -
Eupl01g01024 163 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01024 Eupl-Chr1 29427281 29428337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01024 4 161 C3H Transcription Factor Family AT3G11110 46.203 3.77e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01024 - - ming:122087401 202.216