Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01023 ATGGACTGCTTTCCCTGCAAAGTTCCCTCATCTTCTAATGTTGTGATGGGCAACAAGGAGGAGAAGAAGAAGGGTGGGAAGAGAAGCAAAGGGGTGAAACTCTCAACGGACCCACAAAGCGTTGCAGCTCGACAGAGGAGGCACCGTATCAGTGAGCGGTTCAAGATATTGCAGAGCTTGGTCCCAGGTGGGACTAAGATGGACACGGTTTCCATGTTAGATGAGGCCATTCACTATGTTAAGTTCCTTAAGACTCAGATATGGCTTCATCAAGCAATGATGAACGTCGTCGAAGATGACACGTCTCTCTTCTTTCCTTCTGTTTCTTCCCTCTCTCATCACCCATCAACCTTAACAGCAGTGCCACTACCATCTACATTTCCACCTTATTACAGCTTCCAAGGAGATCACACCAATGTTGCCTCGTTTGTCTAG 435 0.4736 MDCFPCKVPSSSNVVMGNKEEKKKGGKRSKGVKLSTDPQSVAARQRRHRISERFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQAMMNVVEDDTSLFFPSVSSLSHHPSTLTAVPLPSTFPPYYSFQGDHTNVASFV* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01023 144 Gene3D - 37 102 IPR036638 GO:0046983
Eupl01g01023 144 CDD bHLH_AtIND_like 35 93 - -
Eupl01g01023 144 SMART finulus 40 89 IPR011598 GO:0046983
Eupl01g01023 144 MobiDBLite consensus disorder prediction 17 31 - -
Eupl01g01023 144 Pfam Helix-loop-helix DNA-binding domain 44 83 IPR011598 GO:0046983
Eupl01g01023 144 MobiDBLite consensus disorder prediction 17 45 - -
Eupl01g01023 144 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 22 115 IPR045843 GO:0003700|GO:0006355
Eupl01g01023 144 FunFam Transcription factor LAX PANICLE 37 100 - -
Eupl01g01023 144 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 112 IPR036638 GO:0046983
Eupl01g01023 144 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01023 Eupl-Chr1 29422695 29423129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01023 28 108 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 59.036 9.79e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl01g01023 HLH 6.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01023 - - nnu:109114696 160.614