Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01020 ATGGATGGTCCAGGCGAGAAACACCCAATCCGAGACTCCTCCATTACTTCTTTTTCCAGCACTGATAACAGTAACAGTAGCAACAGCAGTGGTTGCAGCAATACCACCACTACTACTATAAGCAGGAAGTGCAAAGGCAAAGGTGGTCCTGATAACAATAAATTCAGATACAGAGGTGTTCGACAGCGTAGCTGGGGCAAATGGGTTGCTGAGATCCGAGAGCCTCGTAAACGGACTCGTAAATGGCTCGGCACTTTCGCCACTGCAGAGGACGCGGCTCGAGCTTATGACCGAGCTGCCATTATCTTGTACGGGTCTAGGGCTCAGCTCAATTTGCAACCCTCCGTGTCGACGGTTCAGTCTTCCTCGCATGGCTCTTCGTCGTCTTCTTCTTCGACTCCAACGTTGAGGCCTTTGCTTCCTCGTCCGTCTGGCTTCGGGTTAACTTCGTCGTCTTACGTCCCTTACGCCGTTTACCCCACCGTTAATTCGTCTCTACTGTGTCCTAACGTCATACAGGGTCCCCAAATTGTACAACAACAACATCAACATCATCAAAGTCATCAACATCGTCCGTGCGAGATTGATGTTGATGCTGGCCCCACCACCTCATATGTAAACCCTAATAATAATCATGGTCGGGCATACGAGGAGATCAACTCTCTTGCGGGTTCCGTCGATTCTAGCTTGTCTCTCTCAAGTCAACCAGCCATCGCACCTGAGTCAACCGTCGCTCCACCGCCAATGGCTGTGGGACCAGCTTCCCCGATATTGTGGCCGTACACTAACGATGATGACTACCCACCGTCTTGTCTTTGGGATGATGGAGATTCGTTCTTGTTCGATCTCTAA 852 0.5047 MDGPGEKHPIRDSSITSFSSTDNSNSSNSSGCSNTTTTTISRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSVSTVQSSSHGSSSSSSSTPTLRPLLPRPSGFGLTSSSYVPYAVYPTVNSSLLCPNVIQGPQIVQQQHQHHQSHQHRPCEIDVDAGPTTSYVNPNNNHGRAYEEINSLAGSVDSSLSLSSQPAIAPESTVAPPPMAVGPASPILWPYTNDDDYPPSCLWDDGDSFLFDL* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01020 283 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Eupl01g01020 283 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Eupl01g01020 283 MobiDBLite consensus disorder prediction 115 138 - -
Eupl01g01020 283 Pfam AP2 domain 56 104 IPR001471 GO:0003700|GO:0006355
Eupl01g01020 283 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Eupl01g01020 283 CDD AP2 56 115 IPR001471 GO:0003700|GO:0006355
Eupl01g01020 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 35 274 - -
Eupl01g01020 283 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Eupl01g01020 283 FunFam Ethylene-responsive transcription factor 2 56 114 - -
Eupl01g01020 283 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Eupl01g01020 283 MobiDBLite consensus disorder prediction 1 57 - -
Eupl01g01020 283 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Eupl01g01020 283 MobiDBLite consensus disorder prediction 12 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01020 Eupl-Chr1 29385103 29385954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01020 42 283 AP2-EREBP Transcription Factor Family AT2G40220 43.403 2.07e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl01g01020 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01020 K09286 - ming:122087515 261.922