Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01016 ATGCCAAAGTCCAAGCGTAACAGACCTGTCACATTGTCGAAGACGAAGAAGAAAGGAAGGGAGCACAAGGAATCGATAGTGAATTCTATAAGACAGGCAGTAGAAGATTATAACTCCATCTATGTTTTCTCTTTCGAGAACATGAGAAATCTCAAGTTCAAGGATTTCAGGGAGCAGCTCAAGTCCAGCAGCAGATTTTTCCTAGGATCGAACAAAGTCATGCAGATCTCCCTAGGTCGGTCTGTTTCTGATGAAGTAAGACCTGGCATTCACAAAGTTTCTAAGCTTCTGCATGGAGATGCTGGGATTCTTTTTACCAATTTGCCTAAGGAAGAGGTGCAAAGGTTGTTTGAAGAATACGAAGAACATGACTTTTCAAGGACAGGAAGCACTGCAACAGAAAAGGTGGAACTTACAGAAGGTCCTCTAGACCAGTTCACACATGAAATGGAGCCCTTTTTGCGTAAGCAAGGGATGCCTGTTCGATTGAACAAAGGTGTGGTGGAGCTTGTCTCCGACTTTGTTGTGTGTGAAGAAGGAAAGCCTTTGTCTCCTGAGTCAGCTCGCATACTGCGTTTGCTAGGAATCAAGATGGCTACCTTTCGACTCCACCTAATCTGCAGATGGAGTCCTGAAGATTTTGAAGTGTATAAAGACGGGCTGGATCTTTCTGACCTTGAATCGTCATAG 690 0.4406 MPKSKRNRPVTLSKTKKKGREHKESIVNSIRQAVEDYNSIYVFSFENMRNLKFKDFREQLKSSSRFFLGSNKVMQISLGRSVSDEVRPGIHKVSKLLHGDAGILFTNLPKEEVQRLFEEYEEHDFSRTGSTATEKVELTEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFRLHLICRWSPEDFEVYKDGLDLSDLESS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01016 229 Gene3D - 30 212 IPR043141 -
Eupl01g01016 229 SUPERFAMILY Ribosomal protein L10-like 20 143 IPR043141 -
Eupl01g01016 229 Pfam Insertion domain in 60S ribosomal protein L10P 127 196 IPR040637 -
Eupl01g01016 229 Pfam Ribosomal protein L10 19 120 IPR001790 -
Eupl01g01016 229 MobiDBLite consensus disorder prediction 1 16 - -
Eupl01g01016 229 FunFam Ribosome assembly factor mrt4 125 198 - -
Eupl01g01016 229 FunFam Ribosome assembly factor mrt4 29 129 - -
Eupl01g01016 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 221 - -
Eupl01g01016 229 MobiDBLite consensus disorder prediction 1 23 - -
Eupl01g01016 229 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Eupl01g01016 229 Gene3D - 125 198 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01016 Eupl-Chr1 29337936 29343972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01016 15 221 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 23.288 1.46e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01016 K14815 - nnu:104602543 404.445