Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01002 ATGGATAGACTGGTTGAGGTGTCCGACCAAGAGGTACGTATGGACTTCAAATTGGGTTGTAAATGCCGCGCTGACGTGCGCCTGAGGTCTCTCAGCACCACCACCCCAATTGCCTTCAAAGTCCAAACTTCTTCCCCTCACAAATTCCTCGTTAATCCACCCAGCGGCCTTATCCCTCCCTTATCCTCCGCCACCTTCCAAGTCATCCTCAAACCCCAAACCCAACTCCCTTCCTCCTTCCCTCGCTCACCCTCCGACCGATTCCTCATCAAAACCGCTCTCGTTACCGAGTTTAACGACTCAGACGAGTCAAGTTGTCCAACTCACACCGAGTCCATCAACTCCTGGTTCTCCTCAAGGACCCATCTAGTGACCTATGACCTCAAGCTCAAGGTCTCCTACGTGGGTCTCTTCCTTCTCCGCCACGCAGTTTCTGGAGGCGATATTGATGCCGTAAAGAACATAATTAAGCGGCAAAAATCCGTGGTTTCCGAGCTCACTCCTCAGGATGCCGAGTCTCTCATCCGTGTCGCAACTGAGTCAAGCAACTCGGATAACATGATTAAGTTGCTTGTCGAAGCCGGGCTGAAGACTGACGTACGTGTGAAATTGGATAACAACAATGCGGAAGGGGAGTCAAGTATCTGGGCATCGAAGGGATGGACGGAAATTCACGTGGCGGCCGCGTTAGATCAGACGGACGAGCTTTCGAGATTGATAAAAGAAGGGTGGGAGGGAGGAGATTCGTTGGACTGTAGGGATAGGGAGGGTCGAACAGCACTGCATTTGGCTGCGAGTAAGGGGAACGTTAGGTGTGCTAAGGTGTTGGTAGAGGCAGGTGCGGATAAGAACGCTGAGAGCCATGACGGTCGGACGCCGTTGTACAGAGCAGCAGTAAATGGGGATCGTCAGATGGTAACTTTGCTTATGGAGATGGGAGCAGACCCCACAATCGCAACGGCTATCGGTGGTCATTCTCCTCTTGACGTGGCTCGAGATAAGGGACATAAAGAGATCATCGAGATTCTGGAACAGGGAGAATCAGTTGTGACAGCAGCAAGAAGAGGGGAGCTCAGGACTCTGGAGTTGCTATTGAAGAAAGGCGCAAGGATGAACCACAGCGATCAGTATGGTATGACAGCCCTCCACACAGCAGCCATCAAGGGGCACAAGGATGCAGTCTCCATGCTCCTCGAGTTCGGAATGGACTTGGAATACCAGGATGCAGAAGGCCACACGCCATTGCACTTGGCAGTGGAGGGAGGGAACATAGAGACCGTTGAGATTTTAGTCAACAAGGGAGCTAATGTTAACGCCAAGAGCAAGCGGGGTGCAACCCCTCTTTACTTGGCTAGAGCCATGGCATATGATGACATCTCGCAGTTCCTCCTCAATTTAGGAGCCTCCTCTTCATCTCTACCATCTTCTTCGTCCTCCTTATCATCAATGTAA 1452 0.5165 MDRLVEVSDQEVRMDFKLGCKCRADVRLRSLSTTTPIAFKVQTSSPHKFLVNPPSGLIPPLSSATFQVILKPQTQLPSSFPRSPSDRFLIKTALVTEFNDSDESSCPTHTESINSWFSSRTHLVTYDLKLKVSYVGLFLLRHAVSGGDIDAVKNIIKRQKSVVSELTPQDAESLIRVATESSNSDNMIKLLVEAGLKTDVRVKLDNNNAEGESSIWASKGWTEIHVAAALDQTDELSRLIKEGWEGGDSLDCRDREGRTALHLAASKGNVRCAKVLVEAGADKNAESHDGRTPLYRAAVNGDRQMVTLLMEMGADPTIATAIGGHSPLDVARDKGHKEIIEILEQGESVVTAARRGELRTLELLLKKGARMNHSDQYGMTALHTAAIKGHKDAVSMLLEFGMDLEYQDAEGHTPLHLAVEGGNIETVEILVNKGANVNAKSKRGATPLYLARAMAYDDISQFLLNLGASSSSLPSSSSSLSSM* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat profile. 443 475 IPR002110 GO:0005515
Eupl01g01002 483 Pfam Ankyrin repeats (3 copies) 286 343 IPR002110 GO:0005515
Eupl01g01002 483 Pfam Ankyrin repeats (3 copies) 212 285 IPR002110 GO:0005515
Eupl01g01002 483 Pfam Ankyrin repeats (3 copies) 352 440 IPR002110 GO:0005515
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat region circular profile. 377 408 - -
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat region circular profile. 289 315 - -
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat profile. 410 442 IPR002110 GO:0005515
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat profile. 377 409 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 135 164 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 170 200 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 410 439 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 323 352 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 256 285 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 443 472 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 377 406 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 289 318 IPR002110 GO:0005515
Eupl01g01002 483 SMART ANK_2a 219 252 IPR002110 GO:0005515
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat region circular profile. 443 469 - -
Eupl01g01002 483 SUPERFAMILY PapD-like 3 136 IPR008962 -
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat region circular profile. 410 442 - -
Eupl01g01002 483 SUPERFAMILY Ankyrin repeat 140 468 IPR036770 -
Eupl01g01002 483 PANTHER ANKYRIN REPEAT CONTAINING 352 464 - -
Eupl01g01002 483 PRINTS Ankyrin repeat signature 426 440 IPR002110 GO:0005515
Eupl01g01002 483 PRINTS Ankyrin repeat signature 257 272 IPR002110 GO:0005515
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat region circular profile. 256 287 - -
Eupl01g01002 483 ProSiteProfiles Major sperm protein (MSP) domain profile. 2 135 IPR000535 -
Eupl01g01002 483 Gene3D - 131 346 IPR036770 -
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat profile. 289 321 IPR002110 GO:0005515
Eupl01g01002 483 Pfam MSP (Major sperm protein) domain 33 102 IPR000535 -
Eupl01g01002 483 Gene3D - 347 480 IPR036770 -
Eupl01g01002 483 Gene3D Immunoglobulins 2 130 IPR013783 -
Eupl01g01002 483 ProSiteProfiles Ankyrin repeat profile. 256 288 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01002 Eupl-Chr1 29191276 29194256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01002 247 442 Ion Channels AT2G25600 33.673 1.51e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01002 - - nnu:104597300 677.552