Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00984 ATGGCGGCATCTACGGACTCTCCCAATAGAGCTTTAACAAACCTTCGCTTCTCTGAACTCAAGCCTCCTCTCTCTGCGCCAGTTCTTGATGCCCTAACCGTAGCTGGTTTTCACTTCTGCACACCAGTTCAAGCCGCAACAATCCCGCTTCTCTGCAGCTTCAAGGACGTCGCGGTTGATGCCGCCACCGGTTCTGGAAAAACCCTAGCTTTTGTCGTCCCACTAGTAGAGATTCTCCGCCGATCTTCAGGACCCCCAAAACCTCACCAGGTCGTGGGAATAATTCTCTCTCCAACAAGAGAGTTGTCATCACAAATATACCATGTTGCACAGCCTTTCATCTCAACATTGTCAAATGTTAAGGCCATGCTTCTTGTTGGGGGATTGGGTGTAAGAGCTGACATGAAGAAAATAGAGGAGGAAGGAGCAAATTTACTAATAGGCACACCTGGGAGGCTTTACGACATAATGGAACGCATGGATATCTTAGATTTCCGGAACTTCGAGATATTGATCTTAGATGAAGCTGATAGGCTCTTGGAATTAGGATTTCAGAAGCAGATAAATTCCATTATATCTCGCTTACCAAAGTTACGTAGGACTGGTCTTTTCTCAGCTACTCAAACAGAGGCAGTTGAAGAGCTCTCCAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAACAGAAGCAAAAACGAACAATGAGTTGGCATCCTCGCAACACTTAGAGTCTTCTAGAACTCCTCTGGGCCTTCATATGGAGTATTTGGAATGCGAAGCAGAGAAGAAGCCATCACAGCTTGTTAGTTTCTTAACAGTGAACGCGTCCAAAAAAATCATCATCTACTTCATGACATGTGCTTGTGTTGATTACTGGGGAGTTGTTCTTCCACAGCTAGCTGCTCTCAAAGGTTACCCCTTAATTTCTCTTCATGGGAAGATGAAGCAGATTGCAAGGGATAAAGCATTGGCATCTTTCACAGCACTTTCAAGTGGTATTCTTCTATGCACTGATGTAGCAGCAAGGGGACTTGACATTCCGGGTGTTGATTGGATCGTGCAGTATGATCCCCCTCAAGATCCAAATGTATTCGTACACAGAGTTGGCCGGACTGCACGGTTGGGCAGACGAGGAAGTGCTATTGTTTTTCTCTTACCGAAGGAGGAAACTTATGTGGAGTTTCTGCGTATACGAAGGATCCCGCTTCAAGAGAGGAAATGTTCTGATGATGTTCCAGATATCGTTCCTCAGATACGTTTTGCGGCAAAGAGGGACCGTGATGTCATGGAGAAGGGACTCAAGGCGTTCGTTTCATTCATCCGTGCATATAAAGAGCATCATTGTTCTTACATTTTCAGGTTACTTCCAGCCCTTGTTCTCAAATTCAATAAAAATCTTCAATGCTTACTTATTGTGTTTCACAGGTGGAAAGAACTAGAGATTGGGAGATTGGCCATGGGATATGGCCTGTTGCAACTCCCTGCAATGCCCGAGGTGAAGCATCACTCACTCTCTACTGATGGTTTTACTCGAGTTGAAGATGTCAATGTGGCAGAGATCAAGTACAAAGATAAATCTCGCGAGAAACAAAGACAGAAGAACTTGAAAGCAAAGAAAGCAGCAGATCATCAAGAACCAAAACTCTGGAAGCCCAAGGTCAATTTGAATGCTGCAGCAACCATTACGAGGAAGAAAACTGCTAAGCAGCGGCGGGCTGCTCAGACAATTGAAGATGAAGATGAGTTGGAGAGGGAGTACCGCTTACTGAAAAAGCTGAAAAAGGGTACTATTGATGAAACTGAATTTGCAAAGCTCACAGGAACTGAAGAGTTGCTTTGA 1845 0.4482 MAASTDSPNRALTNLRFSELKPPLSAPVLDALTVAGFHFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSGPPKPHQVVGIILSPTRELSSQIYHVAQPFISTLSNVKAMLLVGGLGVRADMKKIEEEGANLLIGTPGRLYDIMERMDILDFRNFEILILDEADRLLELGFQKQINSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRTEAKTNNELASSQHLESSRTPLGLHMEYLECEAEKKPSQLVSFLTVNASKKIIIYFMTCACVDYWGVVLPQLAALKGYPLISLHGKMKQIARDKALASFTALSSGILLCTDVAARGLDIPGVDWIVQYDPPQDPNVFVHRVGRTARLGRRGSAIVFLLPKEETYVEFLRIRRIPLQERKCSDDVPDIVPQIRFAAKRDRDVMEKGLKAFVSFIRAYKEHHCSYIFRLLPALVLKFNKNLQCLLIVFHRWKELEIGRLAMGYGLLQLPAMPEVKHHSLSTDGFTRVEDVNVAEIKYKDKSREKQRQKNLKAKKAADHQEPKLWKPKVNLNAAATITRKKTAKQRRAAQTIEDEDELEREYRLLKKLKKGTIDETEFAKLTGTEELL* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00984 614 Coils Coil 567 594 - -
Eupl01g00984 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 226 IPR014001 -
Eupl01g00984 614 SMART DUF4217_3 415 500 IPR025313 -
Eupl01g00984 614 Pfam DEAD/DEAH box helicase 41 215 IPR011545 GO:0003676|GO:0005524
Eupl01g00984 614 CDD SF2_C_DEAD 256 386 - -
Eupl01g00984 614 Pfam Helicase conserved C-terminal domain 265 377 IPR001650 -
Eupl01g00984 614 Gene3D - 256 473 IPR027417 -
Eupl01g00984 614 FunFam RNA helicase 11 229 - -
Eupl01g00984 614 PANTHER RNA HELICASE 16 531 - -
Eupl01g00984 614 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 172 180 IPR000629 -
Eupl01g00984 614 SMART ultradead3 36 236 IPR014001 -
Eupl01g00984 614 Gene3D - 3 229 IPR027417 -
Eupl01g00984 614 CDD DEADc_DDX55 28 226 - -
Eupl01g00984 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 396 IPR027417 -
Eupl01g00984 614 SMART helicmild6 292 377 IPR001650 -
Eupl01g00984 614 Pfam Domain of unknown function (DUF4217) 418 498 IPR025313 -
Eupl01g00984 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 265 421 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00984 Eupl-Chr1 28927572 28937822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00984 19 391 Eukaryotic Initiation Factors Gene Family AT1G72730 31.551 2.51e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00984 K14809 - nnu:104597280 957.592