LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g00972	ATGTCTTCGGAGTATCCCGAAAGGAAGAGAAGATCACGGAGTCGCCGCAATGGGCCCAATTCTATAGCGGACACTCTTGCGAGGTGGAAAGAGCTCAACAATCAACTCGATTGCTCCAACGATGGACATAAACGGGCTCGTAAGGTCCCTGCCAAGGGCTCGAAGAAGGGGTGCATGAGAGGGAAAGGAGGACCTGAGAATTCGCACTGTAATTACAGAGGGGTGAGGCAGAGGACGTGGGGCAAGTGGGTTGCTGAGATTCGTGAACCAAACAAGGGAAGCCGTCTCTGGCTGGGTACCTTCTCTACTGCCCTAAACGCTGCTCTGGCTTACGACGAGGCTGCAAGGGCAATGTACGGTCCCTGTGCCCGCCTCAACCTTCCCCATAGTTATGCTTCGGCTGCAACCCAATCGACTTCTGAGTCCACAGTGACATCCCGTTCTGATGAATGTGGTGCTGAGGATTCCAAGCTATGTGATGCTGAGGAATCCAAGCTCATGGTTGAGGTCCCAATGGTGGAAGGCGAGGATGGACTAGGCGAGTCAGGCACCAGATGTAGGGCTTCTCCTGCAGTGGAAGTTGCTGTGCCAATGAATATTGTGAAGACTACGATGAAGGAGGAGGAGCATATGGGGGTTATGGACTCTGATCCCTTACGTGGGATTGGATTGGAACAAGATAACATGCAGTCTTTCACCATGGACGACATTTTTTTTGATGTGGAGGATCTTCTTGCTGCTGTTGGTTCTGATTCTCCCAATAGTGAGTTTGGGTTGAGGCAGGACTTGAACAACTATAATTTAGTTCAATTAGGGTTCTCCGACAGAGACCAATTGCAGTGTGGGATCTACCCATCAGATATTTCATACCAGATGCAGAACCTCGATGCAGAGCTGTTCGAGAACCTGTACCATATGGAACAGGCGCCCTTGACTGGGGATTGCATTTACGACTTTTCGAAGCCAGTGAAGCAGGATAATGAATTCAGTTATGGATTGAATGATGATGGGCAACAATTGTTTGATTTGGGGTTCCCTGATTTTGGAATTTTAGATGCATCGCGGCAGATGGACGAAGTAAACAAAGAAACATGTCTTCTCTACACACAAGAGCAGAGAGAAACACCCTGGGACTCGACCTGCGTTCCAGGCCATAGAAAAGCAGCTTAG	1170	0.494	MSSEYPERKRRSRSRRNGPNSIADTLARWKELNNQLDCSNDGHKRARKVPAKGSKKGCMRGKGGPENSHCNYRGVRQRTWGKWVAEIREPNKGSRLWLGTFSTALNAALAYDEAARAMYGPCARLNLPHSYASAATQSTSESTVTSRSDECGAEDSKLCDAEESKLMVEVPMVEGEDGLGESGTRCRASPAVEVAVPMNIVKTTMKEEEHMGVMDSDPLRGIGLEQDNMQSFTMDDIFFDVEDLLAAVGSDSPNSEFGLRQDLNNYNLVQLGFSDRDQLQCGIYPSDISYQMQNLDAELFENLYHMEQAPLTGDCIYDFSKPVKQDNEFSYGLNDDGQQLFDLGFPDFGILDASRQMDEVNKETCLLYTQEQRETPWDSTCVPGHRKAA*	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl01g00972	389	MobiDBLite	consensus disorder prediction	39	65	-	-
	Eupl01g00972	389	Pfam	AP2 domain	70	120	IPR001471	GO:0003700\|GO:0006355
	Eupl01g00972	389	FunFam	Ethylene-responsive transcription factor 2	70	129	-	-
	Eupl01g00972	389	ProSiteProfiles	AP2/ERF domain profile.	71	128	IPR001471	GO:0003700\|GO:0006355
	Eupl01g00972	389	SMART	rav1_2	71	134	IPR001471	GO:0003700\|GO:0006355
	Eupl01g00972	389	MobiDBLite	consensus disorder prediction	1	23	-	-
	Eupl01g00972	389	CDD	AP2	70	130	IPR001471	GO:0003700\|GO:0006355
	Eupl01g00972	389	PRINTS	Ethylene responsive element binding protein signature	94	110	IPR001471	GO:0003700\|GO:0006355
	Eupl01g00972	389	PRINTS	Ethylene responsive element binding protein signature	72	83	IPR001471	GO:0003700\|GO:0006355
	Eupl01g00972	389	SUPERFAMILY	DNA-binding domain	71	130	IPR016177	GO:0003677
	Eupl01g00972	389	Gene3D	AP2/ERF domain	71	129	IPR036955	GO:0003700\|GO:0006355
	Eupl01g00972	389	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	7	314	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g00972	Eupl-Chr1	28757567	28760650	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g00972	8	348	AP2-EREBP Transcription Factor Family	AT2G40340	36.389	4.29e-54	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Eupl01g00972		AP2	2.3e-13	CL0081