Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00972 ATGTCTTCGGAGTATCCCGAAAGGAAGAGAAGATCACGGAGTCGCCGCAATGGGCCCAATTCTATAGCGGACACTCTTGCGAGGTGGAAAGAGCTCAACAATCAACTCGATTGCTCCAACGATGGACATAAACGGGCTCGTAAGGTCCCTGCCAAGGGCTCGAAGAAGGGGTGCATGAGAGGGAAAGGAGGACCTGAGAATTCGCACTGTAATTACAGAGGGGTGAGGCAGAGGACGTGGGGCAAGTGGGTTGCTGAGATTCGTGAACCAAACAAGGGAAGCCGTCTCTGGCTGGGTACCTTCTCTACTGCCCTAAACGCTGCTCTGGCTTACGACGAGGCTGCAAGGGCAATGTACGGTCCCTGTGCCCGCCTCAACCTTCCCCATAGTTATGCTTCGGCTGCAACCCAATCGACTTCTGAGTCCACAGTGACATCCCGTTCTGATGAATGTGGTGCTGAGGATTCCAAGCTATGTGATGCTGAGGAATCCAAGCTCATGGTTGAGGTCCCAATGGTGGAAGGCGAGGATGGACTAGGCGAGTCAGGCACCAGATGTAGGGCTTCTCCTGCAGTGGAAGTTGCTGTGCCAATGAATATTGTGAAGACTACGATGAAGGAGGAGGAGCATATGGGGGTTATGGACTCTGATCCCTTACGTGGGATTGGATTGGAACAAGATAACATGCAGTCTTTCACCATGGACGACATTTTTTTTGATGTGGAGGATCTTCTTGCTGCTGTTGGTTCTGATTCTCCCAATAGTGAGTTTGGGTTGAGGCAGGACTTGAACAACTATAATTTAGTTCAATTAGGGTTCTCCGACAGAGACCAATTGCAGTGTGGGATCTACCCATCAGATATTTCATACCAGATGCAGAACCTCGATGCAGAGCTGTTCGAGAACCTGTACCATATGGAACAGGCGCCCTTGACTGGGGATTGCATTTACGACTTTTCGAAGCCAGTGAAGCAGGATAATGAATTCAGTTATGGATTGAATGATGATGGGCAACAATTGTTTGATTTGGGGTTCCCTGATTTTGGAATTTTAGATGCATCGCGGCAGATGGACGAAGTAAACAAAGAAACATGTCTTCTCTACACACAAGAGCAGAGAGAAACACCCTGGGACTCGACCTGCGTTCCAGGCCATAGAAAAGCAGCTTAG 1170 0.494 MSSEYPERKRRSRSRRNGPNSIADTLARWKELNNQLDCSNDGHKRARKVPAKGSKKGCMRGKGGPENSHCNYRGVRQRTWGKWVAEIREPNKGSRLWLGTFSTALNAALAYDEAARAMYGPCARLNLPHSYASAATQSTSESTVTSRSDECGAEDSKLCDAEESKLMVEVPMVEGEDGLGESGTRCRASPAVEVAVPMNIVKTTMKEEEHMGVMDSDPLRGIGLEQDNMQSFTMDDIFFDVEDLLAAVGSDSPNSEFGLRQDLNNYNLVQLGFSDRDQLQCGIYPSDISYQMQNLDAELFENLYHMEQAPLTGDCIYDFSKPVKQDNEFSYGLNDDGQQLFDLGFPDFGILDASRQMDEVNKETCLLYTQEQRETPWDSTCVPGHRKAA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00972 389 MobiDBLite consensus disorder prediction 39 65 - -
Eupl01g00972 389 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Eupl01g00972 389 FunFam Ethylene-responsive transcription factor 2 70 129 - -
Eupl01g00972 389 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Eupl01g00972 389 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Eupl01g00972 389 MobiDBLite consensus disorder prediction 1 23 - -
Eupl01g00972 389 CDD AP2 70 130 IPR001471 GO:0003700|GO:0006355
Eupl01g00972 389 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Eupl01g00972 389 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Eupl01g00972 389 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Eupl01g00972 389 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Eupl01g00972 389 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00972 Eupl-Chr1 28757567 28760650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00972 8 348 AP2-EREBP Transcription Factor Family AT2G40340 36.389 4.29e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl01g00972 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00972 - K09286 nnu:104597267 322.783