Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl01g00951 | ATGCTTTCTGGAGACGTTCCTCCAAGCCAAACCATTTACATTAAAAACCTAAACGAGAAAGTCAAGAAAGATGAATTGAAGAGATCTCTTTATGCTTTATTCTCTCAATATGGAAGGATTCTGGATGTTGTTGCATTGAAGACGGCCAAGCTTCGTGGTCAAGCATGGGTTGTGTTTAGTGAAGTTACAGCTGCTAGTAATGCAGTGCGTCAGATGCAAAGCTTTCCATTTTATGATAAACCTATGCGGATACAGTATGCAAAAACAAAGTCAGATTGTGTAGCGAAAGCCGATGGGACCTTCGTTCCAAGAGAGAAGAAAAAGAAGCAGGAAGAGAAAGCTGAAAGAAAACGAAGGGCCGAGGATGCTCATCAATCTGCTGCTCCGACTAATGATACTAGTGCTCAAAGTAATGGGGGGTCCACTGCTTCTTTCCGCCAAGGAAAATCGGGTGCACAAGATGCAGCTTCAGCCCCAAACAACATACTGTTCGTCCAGAATTTGCCACACGAGACCACGAGTATGATGCTGCAAATGCTATTCCAGCAATACCCAGGTTTCAGGGAAGTTCGGATGATCGAAGCGAAGCCGGGTATCGCCTTTGTAGAGTTTGGAGACGATATGCAGTCAGCAATTGCCATGCAGGCTCTTCAAGGCTTCAAGATTACTCCTCAAAACCCAATGGCCATCACTTACGCCAAAAAATGA | 708 | 0.4463 | MLSGDVPPSQTIYIKNLNEKVKKDELKRSLYALFSQYGRILDVVALKTAKLRGQAWVVFSEVTAASNAVRQMQSFPFYDKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAERKRRAEDAHQSAAPTNDTSAQSNGGSTASFRQGKSGAQDAASAPNNILFVQNLPHETTSMMLQMLFQQYPGFREVRMIEAKPGIAFVEFGDDMQSAIAMQALQGFKITPQNPMAITYAKK* | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl01g00951 | 235 | CDD | RRM2_U1A_like | 159 | 231 | - | - | |
Eupl01g00951 | 235 | MobiDBLite | consensus disorder prediction | 101 | 154 | - | - | |
Eupl01g00951 | 235 | FunFam | U1 small nuclear ribonucleoprotein A | 4 | 109 | - | - | |
Eupl01g00951 | 235 | FunFam | U2 small nuclear ribonucleoprotein B'' | 152 | 235 | - | - | |
Eupl01g00951 | 235 | CDD | RRM1_U1A_like | 11 | 88 | - | - | |
Eupl01g00951 | 235 | Gene3D | - | 150 | 235 | IPR012677 | - | |
Eupl01g00951 | 235 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 163 | 222 | IPR000504 | GO:0003723 | |
Eupl01g00951 | 235 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 82 | IPR000504 | GO:0003723 | |
Eupl01g00951 | 235 | Gene3D | - | 4 | 115 | IPR012677 | - | |
Eupl01g00951 | 235 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 161 | 235 | IPR000504 | GO:0003723 | |
Eupl01g00951 | 235 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 89 | IPR000504 | GO:0003723 | |
Eupl01g00951 | 235 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 9 | 89 | - | - | |
Eupl01g00951 | 235 | MobiDBLite | consensus disorder prediction | 101 | 125 | - | - | |
Eupl01g00951 | 235 | MobiDBLite | consensus disorder prediction | 126 | 154 | - | - | |
Eupl01g00951 | 235 | SMART | rrm1_1 | 11 | 85 | IPR000504 | GO:0003723 | |
Eupl01g00951 | 235 | SMART | rrm1_1 | 162 | 231 | IPR000504 | GO:0003723 | |
Eupl01g00951 | 235 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 223 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl01g00951 | Eupl-Chr1 | 28449125 | 28463858 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl01g00951 | 3 | 235 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 22.176 | 6.31e-08 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl01g00951 | K11094 | - | nnu:104597240 | 389.037 |