Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00951 ATGCTTTCTGGAGACGTTCCTCCAAGCCAAACCATTTACATTAAAAACCTAAACGAGAAAGTCAAGAAAGATGAATTGAAGAGATCTCTTTATGCTTTATTCTCTCAATATGGAAGGATTCTGGATGTTGTTGCATTGAAGACGGCCAAGCTTCGTGGTCAAGCATGGGTTGTGTTTAGTGAAGTTACAGCTGCTAGTAATGCAGTGCGTCAGATGCAAAGCTTTCCATTTTATGATAAACCTATGCGGATACAGTATGCAAAAACAAAGTCAGATTGTGTAGCGAAAGCCGATGGGACCTTCGTTCCAAGAGAGAAGAAAAAGAAGCAGGAAGAGAAAGCTGAAAGAAAACGAAGGGCCGAGGATGCTCATCAATCTGCTGCTCCGACTAATGATACTAGTGCTCAAAGTAATGGGGGGTCCACTGCTTCTTTCCGCCAAGGAAAATCGGGTGCACAAGATGCAGCTTCAGCCCCAAACAACATACTGTTCGTCCAGAATTTGCCACACGAGACCACGAGTATGATGCTGCAAATGCTATTCCAGCAATACCCAGGTTTCAGGGAAGTTCGGATGATCGAAGCGAAGCCGGGTATCGCCTTTGTAGAGTTTGGAGACGATATGCAGTCAGCAATTGCCATGCAGGCTCTTCAAGGCTTCAAGATTACTCCTCAAAACCCAATGGCCATCACTTACGCCAAAAAATGA 708 0.4463 MLSGDVPPSQTIYIKNLNEKVKKDELKRSLYALFSQYGRILDVVALKTAKLRGQAWVVFSEVTAASNAVRQMQSFPFYDKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAERKRRAEDAHQSAAPTNDTSAQSNGGSTASFRQGKSGAQDAASAPNNILFVQNLPHETTSMMLQMLFQQYPGFREVRMIEAKPGIAFVEFGDDMQSAIAMQALQGFKITPQNPMAITYAKK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00951 235 CDD RRM2_U1A_like 159 231 - -
Eupl01g00951 235 MobiDBLite consensus disorder prediction 101 154 - -
Eupl01g00951 235 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Eupl01g00951 235 FunFam U2 small nuclear ribonucleoprotein B'' 152 235 - -
Eupl01g00951 235 CDD RRM1_U1A_like 11 88 - -
Eupl01g00951 235 Gene3D - 150 235 IPR012677 -
Eupl01g00951 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 222 IPR000504 GO:0003723
Eupl01g00951 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Eupl01g00951 235 Gene3D - 4 115 IPR012677 -
Eupl01g00951 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 235 IPR000504 GO:0003723
Eupl01g00951 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Eupl01g00951 235 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Eupl01g00951 235 MobiDBLite consensus disorder prediction 101 125 - -
Eupl01g00951 235 MobiDBLite consensus disorder prediction 126 154 - -
Eupl01g00951 235 SMART rrm1_1 11 85 IPR000504 GO:0003723
Eupl01g00951 235 SMART rrm1_1 162 231 IPR000504 GO:0003723
Eupl01g00951 235 SUPERFAMILY RNA-binding domain, RBD 8 223 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00951 Eupl-Chr1 28449125 28463858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00951 3 235 Eukaryotic Initiation Factors Gene Family AT1G71770 22.176 6.31e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00951 K11094 - nnu:104597240 389.037