Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00896 ATGAGTTGCGGAAAGGAGAACGAAGAATGCGGAGAAGAGGGGGAATTTAAGCGAAGGGGAAGGGACAAGTCTGCAGTGGTTGGTATCCATCTGGAGAAACACTCAGTCACACAGAATGGATCGATCACTGTCCCAGAGTTTAATATTGATGAGAAACTGTTGATCGACCCGAAATTACTGTTTGTTGGGTCGAAGATTGGTGAGGGAGCCCATGGGAAAGTTTATGAAGGAAGGTATGGTGGTCAAATCGTTGCAATCAAAGTTCTCAATCGTGGAAATACCCCAGAAGAAAGAGCAGCACTTGAAGGTCGCTTTTCCCGGGAAGTTGCCATGATGTCTAGAGTAAAACATGAGAACCTTGTCAAGTTCATTGGAGCTTGTAAGGATCCTTTTATGGTGATAGTTACAGAGCTTTTACCGGGGATGTCACTCCGGAAGTATTTGATCAGTATTCGTCCAGAACAGTTGAATCTTCGCGTGGTCATAAATTTTGCTCTTGATATTGCTCGGGCCATGGATTGTCTACATGCCAATGGGATTATACACAGAGATTTGAAACCTGACAATTTGTTGCTTACGGCAAATCAGAAGTCTGTGAAGCTCGCCGATTTTGGTCTTGCAAGAGAAGAAACTGTGACTGAGATGATGACTGCAGAAACTGGAACTTATCGTTGGATGGCTCCTGAGTTATACAGCACTGTTACACTGCGACGTGGGGAAAAGAAGCATTACAACAACAAGGTTGATGTCTACAGCTTTGGGATTGTTCTATGGGAGTTATTGACCAATCGAATGCCATTTGAGGGCATGTCCAACTTGCAGGCTGCTTATGCTGCTGCTTTTAAGCAAATTAGGCCGAATCTTCCGCCGGACATGCCTCCAGATCTCGCGTTCATCATACAATCATGTTGGGTCGAGGACCCTAATGTGCGGCCCAGTTTCAGCCAGATCATTCGCATGCTCAATGCATTCCTCTTCACACTCTCGCCATCCTCACCCCATTTGTCAGACTCTGACTCCATTGAAGCAGCAGAGCCAAGTAATGGTATCATGACTGAGTCATCTGCACGCGCAAGAGGGAAGTTCTCTTTCCTGCGACAACTTTTTACTGCAAGGAGGACTAGGAACACACAATTATGA 1140 0.4561 MSCGKENEECGEEGEFKRRGRDKSAVVGIHLEKHSVTQNGSITVPEFNIDEKLLIDPKLLFVGSKIGEGAHGKVYEGRYGGQIVAIKVLNRGNTPEERAALEGRFSREVAMMSRVKHENLVKFIGACKDPFMVIVTELLPGMSLRKYLISIRPEQLNLRVVINFALDIARAMDCLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRRGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQIRPNLPPDMPPDLAFIIQSCWVEDPNVRPSFSQIIRMLNAFLFTLSPSSPHLSDSDSIEAAEPSNGIMTESSARARGKFSFLRQLFTARRTRNTQL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00896 379 SMART serkin_6 60 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00896 379 Gene3D Phosphorylase Kinase; domain 1 48 139 - -
Eupl01g00896 379 FunFam Kinase suppressor of Ras 1 49 139 - -
Eupl01g00896 379 SUPERFAMILY Protein kinase-like (PK-like) 55 334 IPR011009 -
Eupl01g00896 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Eupl01g00896 379 Gene3D Transferase(Phosphotransferase) domain 1 143 354 - -
Eupl01g00896 379 ProSiteProfiles Protein kinase domain profile. 60 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00896 379 CDD STKc_MAP3K-like 66 321 - -
Eupl01g00896 379 Pfam Protein tyrosine and serine/threonine kinase 62 321 IPR001245 GO:0004672|GO:0006468
Eupl01g00896 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 56 323 - -
Eupl01g00896 379 FunFam serine/threonine-protein kinase HT1 141 342 - -
Eupl01g00896 379 PRINTS Tyrosine kinase catalytic domain signature 136 149 IPR001245 GO:0004672|GO:0006468
Eupl01g00896 379 PRINTS Tyrosine kinase catalytic domain signature 248 270 IPR001245 GO:0004672|GO:0006468
Eupl01g00896 379 PRINTS Tyrosine kinase catalytic domain signature 174 192 IPR001245 GO:0004672|GO:0006468
Eupl01g00896 379 PRINTS Tyrosine kinase catalytic domain signature 292 314 IPR001245 GO:0004672|GO:0006468
Eupl01g00896 379 ProSitePatterns Protein kinases ATP-binding region signature. 66 87 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00896 Eupl-Chr1 27591601 27597718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00896 49 377 MAP Kinase Kinase Kinase AT5G01850 71.186 1.08e-178 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Eupl01g00896 PK_Tyr_Ser-Thr 7.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00896 - - ming:122089296 595.119