Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00892 ATGGCCGCCATTCAGGGTTTCTCTGTTCTTCCTATTCTCTTCCTCTTTCTCTTTAACTTACGCTTTCGAGGTACTTACGGAGACTACGGGGGTTGGGAGGGTGGGCACGCTACGTTCTACGGCGGTGGTGACGCAGCTGGCACAATGGGGGGAGCATGTGGGTATGGCAACTTGTATAGCCAAGGGTACGGAACTAACACCGTAGCTCTCAGTACTGCCTTGTTCAATGGTGGCTTGAGTTGCGGGTCGTGTTACGAGATGAGATGTGACGATGACCCCAAATGGTGCCTCCCTGGGACAATCACAGTTACTGCCACCAATTTTTGTCCCCCTAACTTTGCTTTATCTAACGACAATGGTGGATGGTGCAATCCTCCTCTCCAACACTTCGATATGGCCGAGCCTGCTTTCTTGCAAATTGCTCAATACCGAGCCGGGATTGTTCCAGTCGCCTTTAGAAGGGTTCCTTGTGTGAAGAAAGGAGGAATAAGGTTCACAATCAATGGTCACTCCTACTTCAACTTGGTCTTGATCACCAACGTCGGTGGTGCCGGGGATATCCATTCAGCGTCAATCAAGGGGTCTAAGACAGGGTGGCAAGCCATGTCTAGGAACTGGGGCCAAAATTGGCAGAGTAACTCCTACCTCAATGGACAAAGCCTGTCCTTCCAAGTTACAACTAGCGACGGGAGGACAGTCACTAGCTACGACGTGGTACCGGCCGGTTGGCAATTCGGGCAAACATTCCAAGGAGGGCAATTCTAG 765 0.5124 MAAIQGFSVLPILFLFLFNLRFRGTYGDYGGWEGGHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTVALSTALFNGGLSCGSCYEMRCDDDPKWCLPGTITVTATNFCPPNFALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDIHSASIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYDVVPAGWQFGQTFQGGQF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00892 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Eupl01g00892 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Eupl01g00892 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Eupl01g00892 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Eupl01g00892 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Eupl01g00892 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Eupl01g00892 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Eupl01g00892 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Eupl01g00892 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Eupl01g00892 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Eupl01g00892 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Eupl01g00892 254 Gene3D - 162 254 IPR036749 -
Eupl01g00892 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Eupl01g00892 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Eupl01g00892 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Eupl01g00892 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Eupl01g00892 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Eupl01g00892 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Eupl01g00892 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Eupl01g00892 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Eupl01g00892 254 SUPERFAMILY Barwin-like endoglucanases 14 180 IPR036908 -
Eupl01g00892 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Eupl01g00892 254 PANTHER EXPANSIN-A15 22 254 IPR002963 GO:0009664
Eupl01g00892 254 FunFam Expansin 21 158 - -
Eupl01g00892 254 CDD DPBB_EXPA_N 31 157 - -
Eupl01g00892 254 FunFam Expansin 162 254 - -
Eupl01g00892 254 Gene3D - 22 157 IPR036908 -
Eupl01g00892 254 SMART dpbb_1 67 152 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00892 Eupl-Chr1 27551607 27553245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00892 7 254 Expansin Gene Family AT2G40610 80.723 1.88e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00892 - K20628 qsa:O6P43_020105 442.965