Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00886 ATGGCTATGGCACTAATGCTGGAGTGGGTTGGGGGGGTTGGATACAAGTACACTAGTGAACGATGTGGTTGTGATGGCCCATTTTTTGTGGTGGGATTTGGTACAAGTGGTGGGGTTGTTCAAAAGCTTTTTCATTGTTCCCACCCAACTAAAATCATTGATTATGAGCATAATGAGGTAGATGACAAGAAGAAGATTTTGGATCACCGGCGACGTCGAATTTTAGTGACGGACGAAGCTCATCAGGTAAGGTTTTGTGGACTAGTACAATTAGCAATGGTGCATCGCCGCCTCCTCAATGATGAACCGAGAACGCTACCAAACGATGGAAGTAGGCCACGGGGATTTAACGAGGCAAACTTCGACACCAACATGGTGATCATCCTCGCTGCCTTGCTATGTGCACTGATATTTGCCCTTGGATTGAACTCAATTGTACGTTGTGCTTTACGATGTGGTCGTCGCGCATTCGAGACACCAGATGAGGCTGCCGCCCGTCTTGCTGGGACTGGACTCAAGAAGCGCGCATTGCGTCAGATTCCAGTGGCCGTGTATGGGTCGGGAACCAGTATTCCGGCAACGGATTGCCCAATTTGCCTTGGAGAATTTGTTGACGGAGAGAAGGTTCGGGTCCTACCAAAGTGCAACCATGGGTTCCATGTTAGGTGTATAGACACATGGCTCGTGTCACACTCATCGTGCCCTACTTGCCGTCATTCATTGCTGGAACGGCCAGCGCCGCCTGATGCAGCTGAATTGGATGCCGGACTCCGGCCAACCGTAAATGGGTCTGGTGGACAAGGAGTGGTTGTAATTGTTGATGAGGTGAATTGA 834 0.4988 MAMALMLEWVGGVGYKYTSERCGCDGPFFVVGFGTSGGVVQKLFHCSHPTKIIDYEHNEVDDKKKILDHRRRRILVTDEAHQVRFCGLVQLAMVHRRLLNDEPRTLPNDGSRPRGFNEANFDTNMVIILAALLCALIFALGLNSIVRCALRCGRRAFETPDEAAARLAGTGLKKRALRQIPVAVYGSGTSIPATDCPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLVSHSSCPTCRHSLLERPAPPDAAELDAGLRPTVNGSGGQGVVVIVDEVN* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00886 277 FunFam RING-H2 finger protein ATL72-like 163 242 - -
Eupl01g00886 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 242 IPR013083 -
Eupl01g00886 277 SUPERFAMILY RING/U-box 178 244 - -
Eupl01g00886 277 CDD RING-H2_EL5-like 195 238 - -
Eupl01g00886 277 SMART ring_2 196 237 IPR001841 -
Eupl01g00886 277 Pfam Ring finger domain 195 238 IPR001841 -
Eupl01g00886 277 PANTHER RING-H2 FINGER PROTEIN ATL78 103 244 IPR044602 GO:0016567|GO:0016740
Eupl01g00886 277 ProSiteProfiles Zinc finger RING-type profile. 196 238 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00886 Eupl-Chr1 27471215 27475338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00886 96 247 C3H Transcription Factor Family AT3G10910 61.818 2.13e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00886 - K19040 nnu:104593771 258.455