Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00866 ATGGAGAAAGAGCTGATCGAGCTGTTCGAATCCGCTAAGAAGGCGGCAGACGCTGCGGCAGCAGATGAAGCTTCGTCTGGTGGGTCGGAGGAAGCTCGGTGCGTTGACGCATTGAAGCAGCTGAAGAATTTCCCCGTGACGATGCAGGTTCTTTTCGCGACGCAGGTTGGAAAACGTCTTCGACATCTCACAAAGCATCCTAGGGAGAAGATCCAGGCTGTGGCCTCTGACTTGCTTGAGATATGGAAAAACGTAGTCATCGAGGAAACTGCCAGAAATAAGAAAAATGGAAGCTCGGACCATAAAAGTTCTCCGAAGGTGAAGGTCGAGGTTACAAAGGCAGAGATGGTTAAGGTTCAGAAGGTCCAGAAAGTGGATTCCGTAAAGGTCGAGAAGTTGGAAACTGTGAAGGTTGAGAAAAGGTTTGAAAAGGTCGAGACTGTCAGGGTTGAGAAGATTGGTGGGGGTGAGCCGGTTAAGGTTGAAAAGATACCAAAAGAAGAGAAGCAAGCTTCTGGTAGTAAGAAACCGTCACAAGCCTCTATAGGTCCTCCGAAGCTGACTTCAATGATCAAATGTAATGATGCTTTGCGCGATAAGGTCCGGGAACTTCTTGCAGAGGCCCTATCCAAAGTTTCTAATGAGGCCAACGAAGATATTTTGGATGCAGTGAATGCGTGTGACCCAATTCGGATTGCTGTCTCTGTGGAGTCTATAATGTTTGAAAAATTGGGCCGCTCTAATGGGCCCCAGAAGTTTAAATACAGATCTATAATGTTCAACATCAAGGATCCGAACAACCCAGATTTGCGAAGAAAAGTCCTCCTTGGACAGGTCAAGCCAGACAGACTTATTGATATGACCCCAGAAGAAATGGCAAGTGATCAAAGGAAGCGTGAAAATAACCAAATCAAAGAGAAAGCTTTACTTGATTGTGAACGTGCGGGCGCACCGAAAGCCTCGACAGATCAGTTCAAGTGTGGTCGGTGCGGGCAGCGGAAGTGCACTTACTATCAAATGCAGACTCGTAGTGCAGATGAACCCATGACGACCTTCGTAACGTGTGTGAACTGCAACAACCACTGGAAGTTCTGTTAG 1098 0.4718 MEKELIELFESAKKAADAAAADEASSGGSEEARCVDALKQLKNFPVTMQVLFATQVGKRLRHLTKHPREKIQAVASDLLEIWKNVVIEETARNKKNGSSDHKSSPKVKVEVTKAEMVKVQKVQKVDSVKVEKLETVKVEKRFEKVETVRVEKIGGGEPVKVEKIPKEEKQASGSKKPSQASIGPPKLTSMIKCNDALRDKVRELLAEALSKVSNEANEDILDAVNACDPIRIAVSVESIMFEKLGRSNGPQKFKYRSIMFNIKDPNNPDLRRKVLLGQVKPDRLIDMTPEEMASDQRKRENNQIKEKALLDCERAGAPKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTFVTCVNCNNHWKFC* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00866 365 CDD TFIIS_I 28 86 - -
Eupl01g00866 365 Pfam Transcription factor S-II (TFIIS) 325 363 IPR001222 GO:0003676|GO:0006351|GO:0008270
Eupl01g00866 365 ProSiteProfiles TFIIS N-terminal domain profile. 10 89 IPR017923 -
Eupl01g00866 365 SMART mid_6 195 303 IPR003618 GO:0006351
Eupl01g00866 365 Pfam TFIIS helical bundle-like domain 37 86 IPR017923 -
Eupl01g00866 365 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 365 - -
Eupl01g00866 365 CDD Zn-ribbon_TFIIS 318 364 - -
Eupl01g00866 365 SUPERFAMILY Zinc beta-ribbon 303 363 - -
Eupl01g00866 365 MobiDBLite consensus disorder prediction 162 187 - -
Eupl01g00866 365 ProSiteProfiles TFIIS central domain profile. 197 320 IPR003618 GO:0006351
Eupl01g00866 365 ProSiteProfiles Zinc finger TFIIS-type profile. 323 363 IPR001222 GO:0003676|GO:0006351|GO:0008270
Eupl01g00866 365 FunFam Probable Transcription elongation factor S-II 294 365 - -
Eupl01g00866 365 ProSitePatterns Zinc finger TFIIS-type signature. 327 362 IPR001222 GO:0003676|GO:0006351|GO:0008270
Eupl01g00866 365 SUPERFAMILY Elongation factor TFIIS domain 2 186 295 IPR036575 GO:0006351
Eupl01g00866 365 SMART TFS2_5 8 88 IPR003617 GO:0005634
Eupl01g00866 365 SMART Cys4_2 325 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Eupl01g00866 365 NCBIfam transcription elongation factor S-II 11 365 IPR006289 GO:0003676|GO:0005634|GO:0006368
Eupl01g00866 365 PIRSF TFIIS 2 365 IPR035100 -
Eupl01g00866 365 Pfam Transcription factor S-II (TFIIS), central domain 194 310 IPR003618 GO:0006351
Eupl01g00866 365 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 27 100 IPR035441 -
Eupl01g00866 365 Gene3D - 294 365 - -
Eupl01g00866 365 Gene3D - 175 293 IPR036575 GO:0006351
Eupl01g00866 365 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 103 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00866 Eupl-Chr1 27144661 27161330 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Eupl01g00866 TFIIS_M 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00866 K03145 - nnu:104594463 514.612