Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00837 ATGGATCTGACTGTAGGTATAGACCGGAGGTGCTTCTTCGATGAAGCCTCCGGCATGGCCATTTCGTCGGATGTGAAGTTTTCTGAGCACGTTGTGACAACAAAGAAACTGATTCACTGCCGGAAATCCGCCAGAAAATCTATGGATTCTGATCAGCCAGGGACGAGAACTGTCCGGCAGAAAGTTGTGAGGGTCATCTTTACCGACTTCGACGCCACCGACTCGTCAAGCGACGACGAGGGAGAATTCGTACGGCGAGTGAAGAGACACATCAGAAAGATCGAAATTGAGGCACCTGCTAAAGTGCGCCGGGATGTGTCAGGAAAAAAGAGAAGATTCCGGTTACCGGAATCTGATGACAAACGGCAAAAAAGGTTTAGAGGCGTAAGGCAAAGACCGTGGGGACGTTGGGCGGCCGAGATACGAGACCCCACACGTCGGAAACGATTATGGCTTGGAACGTACGATACGCCGGAAGAAGCGGCGACCGTTTACGATAACGCTGCCGTTAGGTTAAAGGGCCCAGATGCCGTTACAAACTTTCCTTCCATTACTAAAACGGAGACTATCGTCAACGGCGACAGAGACCTCAACGACTTCCCCAAGATTACTGCTTCCTCTCCTACTTCGGTTCTTTATTACCACGGCGACTCGACGCCGTTTGATAGTCTCCGTTACGGTGACGTTGACGCTTTCGGGTTCGACATCGACTTGCCGTTAAATCTGATGGATATCGAGTTGCCTAAAAATGAATTTGGCGAAGTAGACTTCAGCGAGTTTGAACTTTGA 789 0.5006 MDLTVGIDRRCFFDEASGMAISSDVKFSEHVVTTKKLIHCRKSARKSMDSDQPGTRTVRQKVVRVIFTDFDATDSSSDDEGEFVRRVKRHIRKIEIEAPAKVRRDVSGKKRRFRLPESDDKRQKRFRGVRQRPWGRWAAEIRDPTRRKRLWLGTYDTPEEAATVYDNAAVRLKGPDAVTNFPSITKTETIVNGDRDLNDFPKITASSPTSVLYYHGDSTPFDSLRYGDVDAFGFDIDLPLNLMDIELPKNEFGEVDFSEFEL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00837 262 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Eupl01g00837 262 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Eupl01g00837 262 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Eupl01g00837 262 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Eupl01g00837 262 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Eupl01g00837 262 PIRSF PTI6 20 262 IPR017392 GO:0003700
Eupl01g00837 262 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 59 191 - -
Eupl01g00837 262 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Eupl01g00837 262 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Eupl01g00837 262 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Eupl01g00837 262 SUPERFAMILY DNA-binding domain 125 182 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00837 Eupl-Chr1 26868851 26870944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00837 25 224 AP2-EREBP Transcription Factor Family AT4G27950 42.667 1.25e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl01g00837 AP2 7.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00837 K13434 - nnu:104593744 276.944