LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g00827	ATGTTGGGAGTGAAAGTTTGTGTATTGGGATATGTTCTGGCTATCTCAGTTGTTTGCTTCGCATTCCTTGCTGCAGCACAGACTACTGATCCATCGGAAGTTTCTGCATTGCGAGCTATCAAGAGTGGTTTGATTGATCCTATGAAGCATCTCAATAGCTGGAATAAGGGGGATCCATGTAAATTGAATTGGACTGGAGTTTTATGCGTTGATACAATTCGGGCTGATGGATACATGCATGTACAGGAATTGCAACTGCTACATATGAATCTCTCTGGGAGTTTAGCACCTGAGCTAGGCCAACTATCTCATATTGAAGTATTAAATTTTATGTGGAATGGAATAACTGGCGGTATACCGAAGGAGATCGGAAGTATTGCATCTTTGAAACTCTTGCCTCAGGGTCATGATTTATTATTGATATTAGTCTTAGTGCGCTTTGAAAAACTGCCTTTCAGGCTTTTGAATGGAAACAAATTGTCAGGTTCATTACCAGATGAGATTGGCTATCTTCGTAAGTTAAATAGACTCCAAGTAGACGAGAACAAAATATCAGGACCAATACCAAAATCATTCGTAAACTTGAACGGCATTAAACATCTACACTTGAACAATAACTCAATTAGTGGGCAAATTCCACCTGAGCTTTCCAAATTAAACAATCTTCTTCACTTGCTTTTGGACAATAACAACTTATCTGGGTATCTTCCACCGATGTTCTCCGAAATTTCAAACTTGCACATACTTCAACTTGATAACAACCTCTTTGATGGGAGTGAAATTCCAGCTTCTTATGGTGACATGCCAAAGCTGGTGAAATTAAGTCTTAGGAACTGTAGCTTACGGGGAGCCATTCCTGATCTAAGCAGGATCTCAAGCCTTCACTATTTAGATCTTAGCTGGAATCAGCTTACTGGACCCATACCGTCAAATAAGCTTTCTGATAATGTCACCACTATCTATCTGTCGGACAACCATCTTAATGGATCCATCCCAGCAAATTTCTCAGCACTTCCTAATCTTCAGAAACTGTCACTTAAGAACAATTTATTGAGTGGTTCAGTTCCTTCTACCATTTGGCAGAATATGACCTTCAGTGCAGCTGCGAGACTTACATTAGATTTCCGGAACAATTCACTTTCAAACATTTCGAATGACCTTAGTCCTCCAGCAAACGTCACCATAAGGCTACAAGGCAATCCAGTCTGCAACAATGCAAATGGAAACATAGTCCCATTCTGCAGATCTGAAGGTGAAGGTGACGATGCACCGGGAAGCTTGACCAACTCAACAATTGTTTGTCCTATCCAAGCATGTCCTGCAGATAATTACTATGACTATGTCTCAGCATCTCCTGTGCAATGCTTTTGTGCGGCACCAATTAGAGTTGGATATCGGCTAAAAAGTCCTAGCTTCTCATATTTTCGTCCATATGAACTTTCATTTGATGAGTACATAACTAATGCTCTCAACTTGGACCTTTATCAGTTATCCATCGATTCGTTTATCTGGGAACAGGGTCCTAGGCTTAGGATGTACTTAAAGTTTTTTCCTCAGTTTGATAATCACTCGAGTGTATTTAATACAAGTGAGATTCAACGGATTAAAGGCGTGTTGACAACATGGACCTTTCCCGGTAGTGACATTTTCGGACCATATGAACTACTCAACTTCACTCTCCTGGGACCTTATTCAAATGAGAATCGCGAGTCTCAAAGGCCATGGATAAGCAAAATTGCCTTGGTTGGCATTGTATTAGGTGTCATTGCCTGTGTAGGTACAATATCTGCAATCATTGCAATTCTTATCACAAGAGGACGTGATAGATCTCACAATGTGCTCTCAAGAAAACATCCACCGTCAAAACTCTCAATCAAAATTGATGGTGTGAAAAGCTTCACTTTTAAAGAAATGACACTGGCTACAAACAATTTCGACAGCTCAACTCAAGTTGGCCAAGGGGGCTATGGGAAGGTATATAAAGGCATTCTAGCCGATAACACAATCGTGGCCATAAAGCGTGCACAAGAAGGATCCTTACAGGGTCAAAAAGAATTTTGGACAGAGATAGAATTGTTGTCAAGGTTACATCACCGAAACCTTGTCTCTTTGGTTGGATATTGTGACGAAGAAGGGGAACAGATGCTGATTTATGAGTTCATGCCTAATGGCACACTGCGGGATTGGCTTTCTGCTAAATCAAAACACAGTCTGAATTTTGCTATGAGGTTGCGTATTGCATTGGGTTCGGCCAAGGGCATTCTTTACCTCCATACTGAAGCGGACCCGCCTATATTCCACCGAGATATTAAAGCCAGCAACATACTTTTGGACTCCAAGCTTACCGCTAAAGTCGCTGATTTTGGACTCTCACGGCTTGCACCAGTTCCGGATGATGAAGGGACTGTGCCTGGTCATGTATCCACTATTGTGAAGGGCACCCCTGGCTACCTCGATCCAGAATACTTCTTAACCCATAAGTTGACAGACAAGAGTGATGTCTATAGCCTTGGAGTTGTATTTCTGGAATTCTTGACAGGGATGAAACCAATATCGCATGGTAAAAACATCGTCCGTGAGGTGAATGCGGCACATCAATCTGGTATGATTTTCTCAATCTTAGACACTCGCTTGGGCTCTTACTCTCTTGAATGCGTCCAGAAGTTTGTGGCATTGGCCCTCCAGTGTTGCCAGGATGAGCCAACGACGCGACCTTCAATGTCGGAGGTGGTCAGGGAGCTAGAAAACATACTTTTTATGATGCAGGAGTCTGACACCATGTTGGAATCCACAGCTGAATATTCCGGGAAGTTATCGTCTTCTTCGCAAGCATATGTAACAAGGGATCCTTACGTGTCATCCGATGTTAGTGGAAGTGATCTCATCAGCGGTGTCGTCCCTAGTATCAAGCCTCGGTGA	2919	0.4224	MLGVKVCVLGYVLAISVVCFAFLAAAQTTDPSEVSALRAIKSGLIDPMKHLNSWNKGDPCKLNWTGVLCVDTIRADGYMHVQELQLLHMNLSGSLAPELGQLSHIEVLNFMWNGITGGIPKEIGSIASLKLLPQGHDLLLILVLVRFEKLPFRLLNGNKLSGSLPDEIGYLRKLNRLQVDENKISGPIPKSFVNLNGIKHLHLNNNSISGQIPPELSKLNNLLHLLLDNNNLSGYLPPMFSEISNLHILQLDNNLFDGSEIPASYGDMPKLVKLSLRNCSLRGAIPDLSRISSLHYLDLSWNQLTGPIPSNKLSDNVTTIYLSDNHLNGSIPANFSALPNLQKLSLKNNLLSGSVPSTIWQNMTFSAAARLTLDFRNNSLSNISNDLSPPANVTIRLQGNPVCNNANGNIVPFCRSEGEGDDAPGSLTNSTIVCPIQACPADNYYDYVSASPVQCFCAAPIRVGYRLKSPSFSYFRPYELSFDEYITNALNLDLYQLSIDSFIWEQGPRLRMYLKFFPQFDNHSSVFNTSEIQRIKGVLTTWTFPGSDIFGPYELLNFTLLGPYSNENRESQRPWISKIALVGIVLGVIACVGTISAIIAILITRGRDRSHNVLSRKHPPSKLSIKIDGVKSFTFKEMTLATNNFDSSTQVGQGGYGKVYKGILADNTIVAIKRAQEGSLQGQKEFWTEIELLSRLHHRNLVSLVGYCDEEGEQMLIYEFMPNGTLRDWLSAKSKHSLNFAMRLRIALGSAKGILYLHTEADPPIFHRDIKASNILLDSKLTAKVADFGLSRLAPVPDDEGTVPGHVSTIVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEFLTGMKPISHGKNIVREVNAAHQSGMIFSILDTRLGSYSLECVQKFVALALQCCQDEPTTRPSMSEVVRELENILFMMQESDTMLESTAEYSGKLSSSSQAYVTRDPYVSSDVSGSDLISGVVPSIKPR*	973

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl01g00827	972	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	143	236	-	-
	Eupl01g00827	972	Pfam	Leucine rich repeat	172	232	IPR001611	GO:0005515
	Eupl01g00827	972	Pfam	Leucine rich repeat N-terminal domain	31	69	IPR013210	-
	Eupl01g00827	972	CDD	STKc_IRAK	651	917	-	-
	Eupl01g00827	972	Gene3D	Ribonuclease Inhibitor	142	410	IPR032675	-
	Eupl01g00827	972	Gene3D	Ribonuclease Inhibitor	32	139	IPR032675	-
	Eupl01g00827	972	Gene3D	Transferase(Phosphotransferase) domain 1	721	937	-	-
	Eupl01g00827	972	ProSitePatterns	Protein kinases ATP-binding region signature.	651	673	IPR017441	GO:0005524
	Eupl01g00827	972	Gene3D	Phosphorylase Kinase; domain 1	617	720	-	-
	Eupl01g00827	972	SUPERFAMILY	Protein kinase-like (PK-like)	630	932	IPR011009	-
	Eupl01g00827	972	ProSiteProfiles	Protein kinase domain profile.	645	919	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl01g00827	972	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	721	931	-	-
	Eupl01g00827	972	SUPERFAMILY	L domain-like	29	363	-	-
	Eupl01g00827	972	FunFam	Leucine-rich repeat protein kinase family protein	609	720	-	-
	Eupl01g00827	972	PANTHER	RECEPTOR-LIKE PROTEIN 55	39	920	-	-
	Eupl01g00827	972	SMART	serkin_6	645	919	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl01g00827	972	Pfam	Protein kinase domain	647	912	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl01g00827	972	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	765	777	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g00827	Eupl-Chr1	26666354	26712212	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g00827	11	972	Receptor kinase-like Gene Family	AT5G01950	60.496	0.0	1132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Eupl01g00827		Pkinase	7.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl01g00827	-		-	nnu:104588376	1355.5