Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00824 ATGACTAAAAGTCTAAAACCCTCAACCCTCTTTTGTCAAGAGAAAGCGTTCACCGGTTCTTCTTCTTGCGAAACCTCCCATTTCGCCATGGTTAACAGCTCCAACAACACCAACTCCTACGAAGAAGCTCGAAAGCAACGTCTACAAGACAATAAAAAACGATTTGAGGATTTGGGTATTTCGAAGATTTCCGAAAGCTTATCAGAGGACAAGAACTCTGCGAAGAGATCTCTGCTATATCAAGCAAAACGCAAATCAAATATCAGTGCCATGAGCTGTGATATGCTGGAACCAAGACGCTCTTCACGAGCACGCAACCCGATTTCTTCGTATTATGAAGAAGTCAATATAGGCCTTCCACCACTGCGCAAAAGGTCAATTTCAACCTCATGGAAAAGCTACCTTGCAAGACCACTCGATGAAGTAAAATTTGTTTCCGATGAAGACAGAGCCTATGCAATTGAGTGTGCGGAGAATTTTCAAAGTAGTTTACGATCTAGACACCCATCTTTTGTTAAGTCAATGGTTCGATCTCATGTTTATAGCTGTTTTTGGCTGGTAAATTACATTGGTCTTCCAATCAAGTTTTGCAAGGACCATCTTCCCTCAAATGAGCTGAATATGGTCTTGGAGGACGAGAAGGGCTCAGAGTTTGATGCAATATATATTGGGAGTAGAAGGGGTCTTAGTGGTGGGTGGAGAGGTTTTGCTTTGGATCATAAATTGGATGATGGGGATGCTTTGGTGTTTGAACTCATTGAGCCAACGAGATTCAAGGTTTATATTGTTAAAGCACATGAGAATACAAGTGAAGAAAAGCTTAAAAAGAATGACAATACAAAAGTCGCAAAATCAAAGAAACCTGTGAAAGTCGCTAAGAATGCTGATGTTCCCGTTTCTCAAAACCTCCGACCAGAAGGTGGCTCAACAAAGGTGTCCAAGAATGGCGGTACAAAAGCTGCCAAATTAAAGAAAGCTGTGAAAGTTGTTAAGAATGATGATGACTTTGTTTTCTCAAAGCTCCAACCAGAAGATGGTTCGGGGAAGTTGTTCCGAAAGAAAAGCATTTCATCAAAGTTATTTAGAAAGAAGTGCACTTGA 1101 0.4087 MTKSLKPSTLFCQEKAFTGSSSCETSHFAMVNSSNNTNSYEEARKQRLQDNKKRFEDLGISKISESLSEDKNSAKRSLLYQAKRKSNISAMSCDMLEPRRSSRARNPISSYYEEVNIGLPPLRKRSISTSWKSYLARPLDEVKFVSDEDRAYAIECAENFQSSLRSRHPSFVKSMVRSHVYSCFWLVNYIGLPIKFCKDHLPSNELNMVLEDEKGSEFDAIYIGSRRGLSGGWRGFALDHKLDDGDALVFELIEPTRFKVYIVKAHENTSEEKLKKNDNTKVAKSKKPVKVAKNADVPVSQNLRPEGGSTKVSKNGGTKAAKLKKAVKVVKNDDDFVFSKLQPEDGSGKLFRKKSISSKLFRKKCT* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00824 366 Gene3D - 145 268 IPR015300 -
Eupl01g00824 366 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 52 271 IPR044837 -
Eupl01g00824 366 MobiDBLite consensus disorder prediction 272 291 - -
Eupl01g00824 366 MobiDBLite consensus disorder prediction 272 318 - -
Eupl01g00824 366 ProSiteProfiles B3 DNA-binding domain profile. 175 266 IPR003340 GO:0003677
Eupl01g00824 366 CDD B3_DNA 169 264 IPR003340 GO:0003677
Eupl01g00824 366 SMART B3_2 171 266 IPR003340 GO:0003677
Eupl01g00824 366 Pfam B3 DNA binding domain 171 263 IPR003340 GO:0003677
Eupl01g00824 366 SUPERFAMILY DNA-binding pseudobarrel domain 164 265 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00824 Eupl-Chr1 26606967 26616104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00824 39 268 B3 DNA Binding Superfamily AT5G58280 47.308 4.75e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl01g00824 B3 2.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00824 - - nnu:104588380 322.783