Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00819 ATGGAAACTTCCGGTAGCAATTCTGACTCGTACAGGAATTCGTCGGGCACTAGTAATTCTAGAAGATATGGAATACAATTCTCTGCTGCGAATTTCATCCAGGCGCCATTATCGGCTTTGTTAGAATATTCTGGTATTCTTCGTACCAGGTCGAATCATCAGGAGACGGAGGGTTTGATGAATGGAGGTGCGGCATCTGGTTTCCGGGCTCACATTCCGAACCGGTTGGATGATTCCGCTGCAGGTAACAGCGATGGGGAGGTATCCATTCGGATAATTGGTGCCGGAGAACAAGAGCACGTGAGGGTGGGAGCCAGTCTACCACCGTCACCAGTTGGTCAGGGGAGAGAAGGTAACCCTGGCGAGAATGGCGTCTCCACCGAGCAGATTGCTGGAGTGGCAGCAGCATCAGCATCAGATCGTCAGGGAGACACGGGAAATGAAGGTGGGGCAAGTGAGGGGGTTTCCTTGTCAGCATCAGCTTCAATCTCGACTGTTAATTCAGGGAATGGAAACATGGATGGGGAGGCTGGTAATGGTGTGGGTGGGAATAACAGGGATTCCTCTTACCAGAGATACGATATTCAGCAGGTCGCCAGGTGGATTGAGCAAATTCTACCGTTTTCGTTGCTTCTGTTGGTTGTCTTCATTCGGCAGCATTTGCAAGGTTTCTTTGTGACAATTTGGATTGCTGCTGTGATGTTCAAGTCAAATGATATTCTAAGGAAGCAGACAGCTCTAAAGGGAGAGAGAAAAATATCTGTTCTCATTGGCATCACTACAATTTTCATGCTTCATGTGGTTGGAGTTTACTGGTGGTATCGCAACGATGATCTTCTATACCCATTGGTTATGCTTCCTCCAAAAGCAATACCACCATTTTGGCATGCTATATTCATCATCATGGTGAATGATACAATGGTGCGGCAGGCAGCAATGGTTTTCAAGTGCATACTACTGATGTATTACAAGAACAGCAGAGGCCGCAACTATCGCAAGCAGGGTCAAATGCTAACTGTAGTTGAATATATGCTGCTGCTATATCGTGCGTTGTTACCAACTCCTGTGTGGTACCGGTTCTTTTTGAACAAGGAGTATGGAAGCCTCTTTTCATCACTAACCACAGGGTTGTACCTTACTTTCAAGCTCACATCGGTTGTTGAGAAGGTCCAATCCTTCTTTGCTGCATTAAAGGCATTGTCACGTAAGGAGGTCCATTATGGGTCTTATGCCACATCCGAACAGGTCAATGCAGCAGGTGATCTGTGTGCTATTTGCCAGGAGAAAATGCATGCTCCAATCTTACTACGCTGCAAACACATCTTTTGTGAAGATTGTGTATCGGAATGGTTTGAGAGAGAACGGACATGCCCGCTGTGCAGGGCCTTGGTTAAACCGGCAGACCTCAGATCATTCGGTGATGGGTCAACCAGTCTGTTCTTCCAGTTATTCTAA 1455 0.4687 METSGSNSDSYRNSSGTSNSRRYGIQFSAANFIQAPLSALLEYSGILRTRSNHQETEGLMNGGAASGFRAHIPNRLDDSAAGNSDGEVSIRIIGAGEQEHVRVGASLPPSPVGQGREGNPGENGVSTEQIAGVAAASASDRQGDTGNEGGASEGVSLSASASISTVNSGNGNMDGEAGNGVGGNNRDSSYQRYDIQQVARWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKGERKISVLIGITTIFMLHVVGVYWWYRNDDLLYPLVMLPPKAIPPFWHAIFIIMVNDTMVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTVVEYMLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00819 484 ProSitePatterns Zinc finger RING-type signature. 438 447 IPR017907 -
Eupl01g00819 484 MobiDBLite consensus disorder prediction 140 154 - -
Eupl01g00819 484 MobiDBLite consensus disorder prediction 166 185 - -
Eupl01g00819 484 MobiDBLite consensus disorder prediction 1 20 - -
Eupl01g00819 484 SUPERFAMILY RING/U-box 416 466 - -
Eupl01g00819 484 CDD RING-HC_RNFT1-like 421 461 - -
Eupl01g00819 484 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 484 IPR044235 GO:0061630|GO:1904294
Eupl01g00819 484 Pfam Zinc finger, C3HC4 type (RING finger) 421 464 - -
Eupl01g00819 484 ProSiteProfiles Zinc finger RING-type profile. 423 461 IPR001841 -
Eupl01g00819 484 SMART ring_2 423 460 IPR001841 -
Eupl01g00819 484 MobiDBLite consensus disorder prediction 105 154 - -
Eupl01g00819 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 471 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00819 Eupl-Chr1 26527197 26540152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00819 1 484 C3H Transcription Factor Family AT5G01960 67.629 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00819 - K22379 nnu:104612968 828.935