Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00811 ATGGATGCGGAATCACAAAGGATTTCCCAGGAGTCCGTACAGTCTGTGGAAATTGCCCAGATGGATAGTGGTGTAGTAGTTCACCATTTTGAGCAACCAGAAGAACATTGTGCCCTATGCAGAAGAATCTTTTTACCAGATAATGAAGCAAATGAAGGTCCTGAAACCTTTAATATATGTGGGGACTGTAAAGCTATGTATGTTGATGATCTTGAGACCACCATACGAGACACTCACTGGAGAAGGCCACTAAGAGGAAGAAGAACCAGGTACAGCAGGAGTTCTGCTGAGTCAATCGAGGATCTGTTCTCACAGCAGTTTTCACATCTGATTAATCTGGTGAGGCAAAATCAGCATACTCCCCCCCTTCCTGCCTCTGAGCATGAAGCCCAACTAGTTGATGCTGATACTTCAGCAAGGGTGCTGCAGCGTACAAGTTCACGTACTACTCCTAGCGGGTCTAGAAGATGGCAGAGGTCTTTGTCTGATAATGAAAGCCAAGGTTTTGACAACTTGGATTCTGTTTTTGGGGAGAGTGAATCCAACATGAGCTTTGGTGGGTATGGGGCTTTCCATGGTGAGAGTGATGCTGTTTCTTTTAGTGCTTATGGTGGGGACTCGGATTTTTCTATGGATGAGCATAGTTTCCTGGACAGAGAAATGTTCATCCAACCAGATGATGGAAGCAATTTTGACAGTGATACCGATATTGACCCAATGCATGCAGGTCTTAATCAATGGAACTCAGATGACCAAGACGAAGGTGAATGGGAAGAAGTTGATGTTGAGGAAAACACTCTTGAAACTACAGAAGCAGAAGGTTGGATCCAAGGTTCTATCACTAGGAGCCCTGGTGAAAACAACGGTCCCTTAAATTGGTTGAGAGGGATTCAGTCTCTTGAAAATGGGGGTACCATTCGTTGGAGAGTTCAGGAAAGTAGACGAACACATATCCCTAACATCTTTGCTAACTTAGAGGAATCAGAGGTACCACCTTACACTGGGAACTCAGGTGACTATCTTGATGCAAGAGGCTTTGAAGAACTGCTTGAGCAACTTGCAGAGGATAGCTCTAGACGAGGGGCGCCTCCAGCTGCTGCATCATTTGTTGATAGTCTGCCTCGGGTAATCATTAGTGAACACCACGAGAAGTATGGTGGTTTGGTCTGTGCAGTTTGCAAGGATCCTCTATCCATTGGTACTGAAGTAAACCAGCTTCCTTGCTTGCATCTGTACCACCCTTCCTGTATCTTACCATGGTTGAGTGCAAGGAACTCGTGCCCCATTTGTCGGTACGAGCTTCCAACTGATGACAAGGATTATGAAGAGGGAAAGCGAAACACTGGCAGTAGAATGGAAATTCGAGAGATCCAGCAGGAGGACCCAAGTGAGGACAGTTCCTCTGATGTGTCCAATGATGCCGAGGGAGACGAAGGCCATGAATCAAGTAATGTAACAATGGAGCCGGGCGAGTTGGTCAATGTGGATTGTACCACAAATAGCTCTGGCAGAGAGGGTACAAGAGGAGGGTGGTTTTTTATTGCTGCTGCACCGATTGTTAGTCTCGTTGGTATTGTTCTTGTTTTGTGGTTCCGGAATCCTCTCGTAGAGGGAAGGCCTAGAGGCCGTTGTGGTTTCCATCAGCAGCAAGTTCATGGATCATCTGGGAGCTCATCCAGAAACGGTCAAAGGGAGAACAGGAATAGGAGATGGTGGTCTCTCTTTTAA 1728 0.4624 MDAESQRISQESVQSVEIAQMDSGVVVHHFEQPEEHCALCRRIFLPDNEANEGPETFNICGDCKAMYVDDLETTIRDTHWRRPLRGRRTRYSRSSAESIEDLFSQQFSHLINLVRQNQHTPPLPASEHEAQLVDADTSARVLQRTSSRTTPSGSRRWQRSLSDNESQGFDNLDSVFGESESNMSFGGYGAFHGESDAVSFSAYGGDSDFSMDEHSFLDREMFIQPDDGSNFDSDTDIDPMHAGLNQWNSDDQDEGEWEEVDVEENTLETTEAEGWIQGSITRSPGENNGPLNWLRGIQSLENGGTIRWRVQESRRTHIPNIFANLEESEVPPYTGNSGDYLDARGFEELLEQLAEDSSRRGAPPAAASFVDSLPRVIISEHHEKYGGLVCAVCKDPLSIGTEVNQLPCLHLYHPSCILPWLSARNSCPICRYELPTDDKDYEEGKRNTGSRMEIREIQQEDPSEDSSSDVSNDAEGDEGHESSNVTMEPGELVNVDCTTNSSGREGTRGGWFFIAAAPIVSLVGIVLVLWFRNPLVEGRPRGRCGFHQQQVHGSSGSSSRNGQRENRNRRWWSLF* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00811 575 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 298 435 - -
Eupl01g00811 575 MobiDBLite consensus disorder prediction 548 562 - -
Eupl01g00811 575 ProSiteProfiles Zinc finger RING-type profile. 390 431 IPR001841 -
Eupl01g00811 575 MobiDBLite consensus disorder prediction 487 501 - -
Eupl01g00811 575 MobiDBLite consensus disorder prediction 438 462 - -
Eupl01g00811 575 FunFam E3 ubiquitin-protein ligase RING1-like 351 437 - -
Eupl01g00811 575 MobiDBLite consensus disorder prediction 546 567 - -
Eupl01g00811 575 SUPERFAMILY RING/U-box 371 437 - -
Eupl01g00811 575 SMART ring_2 390 430 IPR001841 -
Eupl01g00811 575 Pfam Ring finger domain 390 431 IPR001841 -
Eupl01g00811 575 MobiDBLite consensus disorder prediction 438 501 - -
Eupl01g00811 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 437 IPR013083 -
Eupl01g00811 575 MobiDBLite consensus disorder prediction 135 171 - -
Eupl01g00811 575 MobiDBLite consensus disorder prediction 138 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00811 Eupl-Chr1 26425387 26431907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00811 33 575 C3H Transcription Factor Family AT5G01980 44.465 4.94e-123 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00811 - - tss:122651809 759.214