Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00804 ATGTATATCAAAGAAATCTGTTTAGAGGGGTTCAAGTCTTACGCCATAAGAACGGTGGTTCCTGGTTTCGATCCCTTCTTCAATGCCATCACGGGGCTTAATGGCTCGGGAAAATCAAACATCCTGGACTCCATCTGCTTTGTATTGGGAATCACAAACCTGCAACAGGTCCGGGCTTCGAATCTTCAGGAACTAGTTTACAAGCAGGGACAAGCTGGAATTACCAAAGCTACGGTTTCTGTTGTCTTTGACAATTCGGATCGGAATCGAAGTCCCCTTGGATACGAAGATAGTCGAGAGATCACAGTAACCCGACAGATTGTGGTGGGTGGAAGAAACAAATACCTCATCAATGGACGCCTTGCCCAACCAAAGCAAGTCCAAAATCTTTTCCATTCTGTGCAGCTTAATGTCAACAATCCACACTTCCTCATAATGCAAGGGCGCATCACCAAGGTTTTGAACATGAAACCTCCTGAGATCTTATCCATGCTTGAAGAGGCTGCTGGGACAAGAATGTATGAGACAAAGAAGGAGGATGCTTTGAAGACACTTGGGAAGAAGCAGAGCAAAGTTGATGAGATAGATAGACTTCTTGACCAGGAAATACTGCCTGCTTTGGAGAAGCTGAGGAAAGAAAAGATGCAGTACATGCAGTGGGCTAATGGTAATGCAGAATTGGATCGTCTTAGAAGGTTCTGCATTGCTTATGAATTTATCCAGGCGGAGAAGATAAGAGATGATGCTGTCAGTGGGGTCGAACAAATAAAAGCCAAGATTGCTGATATTGATGATGATACAGGAAGAATGCAGGTGAAGATTCAGGAAATGGAGACAAACATAACAAACTTGACTGCTGACAAAGATGCTATCATGGGTGGGGAGGTGAAAACTTTGTCGGATAAAGTGGATGCCCTTTCTTGTGATCTTGTGAAGGAAACTTCCATGCTGAAAAATCAAGAGGATTCTCTCAGGGCTGAAAAAAAGAATGCTGAAAAGATTGCTAGAAGTATTGAAGAAATTAAAAAATCTATAGAAGAGAGGGACTCCGCTGTTACAAAAGCTGAAGATGGAGCTTCTGATCTGAAAAAGAGGGTTGAGGATCTATCTAAGAATTTGGAAGAGTATGAAAAAGAATACCAGGGTGTGCTAGCTGGTAAGAGCAGTGGGAATGAGGAGAAGTGTCTTGAAGATCAATTAGGAGAAGCAAAAACTGCAGTTGGGAGTGCTGAAACAGAATTGAAGCAGCTGAAAACAAAAATAAGCCATTGTGAGAAAGAGCTGAAAGAGAAAAGGCAACAGTTAATGTCAAAGCGTGAAGAAGCTGTTGCTGTAGAGAATGAGCTCAATAGCAGAAGAAAAGATGTGGAAAAGGTTAAAATGGCCCTGGAATCTGTTCTCTATGAAGAGGGTCAGATGGAAGCTTTGCAAAAGGATCGGCAGACAGAGTTGGAGGTGGTGCAGAAGTTGAGGGACGAAGTTCGGATTCTTTCAGCAAAATTGTCAAATGTTCATTTCACGTACCGTGACCCCGTGAAGGATTTTGACAAGTCAAAGGTTAAGGGTGTGGTTGCAAAGCTCATTAAAGTGAGGGATAGTTCCACAATGACTGCCTTGGAGGTTGCTGCTGGAGGCAAGTTATTTAATGTTGTTGTAGACACAGAACATACAGGAAAGCAGCTACTCCAAAATGGTGATCTTCAAAGAAGAGTAACGATTATACCTTTGAACAAAATCCAATCCCATACTGTTCCTCCTAGGGTTCAACATACAGCTGTTAGAGTGGTTGGTAATGGAAATGCAGAATTGGCACTTTCTTTGGTTGGCTATGATGAGGAAGTGAAGACTGCAATGGCATATGTTTTTGGTTCAACCTTTGTTTGCAGAACTGTTGATGCTGCAAAGGAGGTTGCTTTTAATAGAGAAATATCCACCCCAAGTGTAACTCTAGAAGGCGATATATTTCAGCCAAGTGGTCTCCTGACTGGTGGTAGCCGCAAAGGTGGCGGTGAATTGTTAAGGCAACTTCATGATTTGGCAGAGTCTGAATCAAAGCTTTCCATTCATCAAAAGAGATTATCAGAAATTGAAAACAAGATTACCCAGCTCCAGCCTCTACAAAAAAAGTTCACGGACCTTAAATCGCAGTTAGAACTTAAGTCATATGACCTTTCTCTATTCCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGCTAGGTGAACTAGTCAAAAAGATCGAGCGGGAGCTTGAAGAAGCAAAACTGGGAGCAAAAGAAAAGCAACTTCTGTATGAAAACTGTGTATCTACTGTGTCATTGCTTGAAAAATCTATCAAAGAGCATGCAAATGGAAGGGAGAGCAGACTAAAAGATTTAGACAGGAAGATTAAGTCAACAAGGTCTCAGATGCAATCAGCTTCAAAGGACCTCAAGGGACATGAAAATGAAAGAGAGAGGCTTATTATGGAGAAGGAAGCGGTCATTCTAGAGCATGCCTCCTTGGAGAATCAGGTGGCTTCTTTAGAGATACAGATCAACAGTCTCACGTCAGAAGTAGATAAACATAAAATCAAGGTTAATTCCGTGAAGAATGATCATGACCAAGCTCAATCTGATCTTAGTTCGATTCGTTCGAAGATGAAAGAATGTGACTCCCAGATAAATTGCATTGTCAAGGAGCAGCAGAAGCTTCAACATAAACTTAGTGATTCTAATCTAGAGAGGAAGAAAATGGAAAATGAGGTGAAACGGATGGAGATGGAACAGAAAGATTGTTCTTCGAAGGTAGATAAGCTACTTGATAAGCATAGCTGGATTGCATCTGAGAAACAGCTGTTTGGAAAAAGCGGCACTGATTATGATTTCTCTTCTTGCGACCCTCATAAAGCAAGGGAGGAACTGGAAAAGCTGCAAGCTGAGCAATCAGGCCTTGAGAAGAGGGTCAACAAGAAGGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAACGACTTAATATCCAAGAAAAACATAATTGAGAATGACAAGTCAAAAATCAAGATGGTGATTAAAGAGCTAGACGAGAAGAAAAAGGAAACACTAAAAGTTACATGGGTTAAAGTTAACAATGACTTTGGATCTATCTTTTCTACCTTATTACCGGGCACAATGGCAAAGTTAGAGCCTCCTGAAGGAGGTAGTTTCTTAGATGGTCTTGAAGTTCGTGTTGCATTTGGAAGCGTGTGGAAGCAGTCCTTGTCAGAACTTAGTGGAGGGCAAAGATCTCTTCTTGCACTTTCTCTCATTTTGGCATTGCTTCTCTTCAAACCAGCACCACTTTATATACTTGATGAGGTAGATGCAGCTCTAGATCTGAGCCACACGCAGAACATTGGAAGGATGATCAAAGCTCACTTCCCACATTCCCAGTTCATTGTGGTTTCTCTGAAAGAAGGGATGTTCAATAATGCCAATGTTCTTTTCCGGACCAAATTTGTAGATGGGGTTTCTACTGTTCAGAGAACTGTCACGTCAAAATAG 3522 0.4162 MYIKEICLEGFKSYAIRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSVVFDNSDRNRSPLGYEDSREITVTRQIVVGGRNKYLINGRLAQPKQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEDALKTLGKKQSKVDEIDRLLDQEILPALEKLRKEKMQYMQWANGNAELDRLRRFCIAYEFIQAEKIRDDAVSGVEQIKAKIADIDDDTGRMQVKIQEMETNITNLTADKDAIMGGEVKTLSDKVDALSCDLVKETSMLKNQEDSLRAEKKNAEKIARSIEEIKKSIEERDSAVTKAEDGASDLKKRVEDLSKNLEEYEKEYQGVLAGKSSGNEEKCLEDQLGEAKTAVGSAETELKQLKTKISHCEKELKEKRQQLMSKREEAVAVENELNSRRKDVEKVKMALESVLYEEGQMEALQKDRQTELEVVQKLRDEVRILSAKLSNVHFTYRDPVKDFDKSKVKGVVAKLIKVRDSSTMTALEVAAGGKLFNVVVDTEHTGKQLLQNGDLQRRVTIIPLNKIQSHTVPPRVQHTAVRVVGNGNAELALSLVGYDEEVKTAMAYVFGSTFVCRTVDAAKEVAFNREISTPSVTLEGDIFQPSGLLTGGSRKGGGELLRQLHDLAESESKLSIHQKRLSEIENKITQLQPLQKKFTDLKSQLELKSYDLSLFQSRAEQNEHHKLGELVKKIERELEEAKLGAKEKQLLYENCVSTVSLLEKSIKEHANGRESRLKDLDRKIKSTRSQMQSASKDLKGHENERERLIMEKEAVILEHASLENQVASLEIQINSLTSEVDKHKIKVNSVKNDHDQAQSDLSSIRSKMKECDSQINCIVKEQQKLQHKLSDSNLERKKMENEVKRMEMEQKDCSSKVDKLLDKHSWIASEKQLFGKSGTDYDFSSCDPHKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLISKKNIIENDKSKIKMVIKELDEKKKETLKVTWVKVNNDFGSIFSTLLPGTMAKLEPPEGGSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVTSK* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00804 1173 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl01g00804 1173 MobiDBLite consensus disorder prediction 783 798 - -
Eupl01g00804 1173 Coils Coil 400 448 - -
Eupl01g00804 1173 Gene3D - 425 591 - -
Eupl01g00804 1173 Gene3D - 798 892 - -
Eupl01g00804 1173 Coils Coil 982 1026 - -
Eupl01g00804 1173 Gene3D - 592 666 - -
Eupl01g00804 1173 SUPERFAMILY Smc hinge domain 479 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl01g00804 1173 Coils Coil 894 928 - -
Eupl01g00804 1173 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Eupl01g00804 1173 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1172 - -
Eupl01g00804 1173 Coils Coil 352 386 - -
Eupl01g00804 1173 Pfam RecF/RecN/SMC N terminal domain 2 368 IPR003395 -
Eupl01g00804 1173 SUPERFAMILY Tropomyosin 679 876 - -
Eupl01g00804 1173 Coils Coil 789 865 - -
Eupl01g00804 1173 FunFam Structural maintenance of chromosomes 2 995 1173 - -
Eupl01g00804 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
Eupl01g00804 1173 Pfam RecF/RecN/SMC N terminal domain 858 1161 IPR003395 -
Eupl01g00804 1173 Gene3D - 995 1173 IPR027417 -
Eupl01g00804 1173 SUPERFAMILY Tropomyosin 295 498 - -
Eupl01g00804 1173 Coils Coil 317 348 - -
Eupl01g00804 1173 Gene3D - 1 202 IPR027417 -
Eupl01g00804 1173 PIRSF SMC 1 1157 IPR024704 GO:0005524|GO:0016887
Eupl01g00804 1173 Coils Coil 473 493 - -
Eupl01g00804 1173 MobiDBLite consensus disorder prediction 783 814 - -
Eupl01g00804 1173 Coils Coil 743 763 - -
Eupl01g00804 1173 FunFam Structural maintenance of chromosomes 2 518 582 - -
Eupl01g00804 1173 FunFam Structural maintenance of chromosomes 2 1 202 - -
Eupl01g00804 1173 Coils Coil 679 699 - -
Eupl01g00804 1173 Pfam SMC proteins Flexible Hinge Domain 519 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00804 Eupl-Chr1 26273057 26286807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00804 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.810 1.73e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00804 K06674 - nnu:104589909 1902.49