Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00780 ATGGAAAATAGAAGATACAAATGGGTGAAAACTGAACAAGAAGTTACTTGGGGGAGAGAACATAGTGATCGTTGTGTTCTCCATGCTCCATTGCTGAAATGGGATCCGAGTCTCATCCCTTCTTCTTGGCGTTGCACCAAGGACTGCATCTTTGTGCCGTATTTCCCAGCAACAGAGCCAGAGAAGTTCGCCGTGGTGCATCGGATCTTCGGTGCTAGCAATATCAGCAAAATGTTGCAAGACATTCCTATCAAGTATAGAGGAGATGCTGTCAAAAGCATGGTTTATGAAGCTGATGCAAGGCTCAAGAATCCTGTTTATGGCTGTGTTACCTCCATTGCTTCCCTTCAGAGCCTAGTTTCTCAGTTACAAACTGAAGTAGCCACAGCTCTTGCAGAAATCATGACACTAAGAACCCAACTATCAGAAGCTTTATCCATGTTAACATACGGAAGCGCCCAAACAATGGAAACAGCAGAGACCCAACAGTCCAGTGATACCGCTTACACGCTCAGCCCGGCTTATTTCCATGCTGGTGAATTTTAA 546 0.4505 MENRRYKWVKTEQEVTWGREHSDRCVLHAPLLKWDPSLIPSSWRCTKDCIFVPYFPATEPEKFAVVHRIFGASNISKMLQDIPIKYRGDAVKSMVYEADARLKNPVYGCVTSIASLQSLVSQLQTEVATALAEIMTLRTQLSEALSMLTYGSAQTMETAETQQSSDTAYTLSPAYFHAGEF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00780 181 Pfam Lateral organ boundaries (LOB) domain 44 129 IPR004883 -
Eupl01g00780 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 44 157 - -
Eupl01g00780 181 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Eupl01g00780 181 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00780 Eupl-Chr1 25886178 25888490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00780 44 140 AS2 family AT2G30130 59.794 1.00e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl01g00780 LOB 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00780 - - msin:131225657 182.956