Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00760 ATGATGGCAGCTTCTTCCATCTCCATGCCTGCTGCTACTGCTGCTTCTTCAACTTCTTCTACTTCAGTTCGTCTCCACCACCACCACTACCCAATAACCACTCTCTCCTTCGACTACTCTGCTACTACCATTACTCTTGCAGCAGAAACAAAACCCAGAATTCTCCAATTCAAAACTACCCCAAACACCCACCTGCCTCTTCTCTCCATCCCATCTCATTCTCTCCGTTGCCGTGCCTCCGATGCTGCCTTCGACAGCTTCGAAGACTCCCAAAGCCAAGAATTCGAGGAAGAAGATGAAGATGAAGATGAAGATGATGATGATGATGATGAGGAGGAGGATGAACAGCAGGAACCATCACCAGCACCTGAAGGGAGAAGATTATATGTGGGGAACCTGCCTTATGCTATGACTTCTTCCCAACTCACCGAGGTCTTCGGTGAGGCCGGCCGAGTTGAGGCTGTAGAGATAGTTTATGATCGAGTAACAGACAGAAGCAGAGGATTTGCTTTCGTAACGATGGGCAGCTTCGAAGAGGCCAAAGAAGCTATTAGGATGTTCGATGGTTCTCAAGTTGGAGGGCGTAGTGTGAAGGTGAACTTTCCTGAAGTGCCACGGGGAGGAGAGAGGGAGGTAATGGGCCCGAAAATCCGTAGCAGCTACCGGGGCTTCGTCGACAGCCCTTACAAGATATATGCTGGGAACCTCGGCTGGGGCCTCAATTCCCAGGGCCTGAGAGACGCTTTTGCCGACCAGCCTGGCCTACTGAGTGCCAAGGTCCTCTATGACAGGGACTCTGGTAGGTCTAGGGGGTTTGGGTTTGTCTCCTTTGCCTCTGAGGAGGAGGCAGAGTCTGCCATCAATGCCATGAATGGAGTGGAGGTGGAAGGGCGGCCACTGAGGTTAAATATGGCTGCGGAAAGAGCCACAACTGGCACTCCTCAAAGACAAGAAACAAAGTCGGATATGAAAGAAGATATCCGTAGTAATGCAATTCAATCTAGTATCAGTGCCTACTGA 1020 0.5059 MMAASSISMPAATAASSTSSTSVRLHHHHYPITTLSFDYSATTITLAAETKPRILQFKTTPNTHLPLLSIPSHSLRCRASDAAFDSFEDSQSQEFEEEDEDEDEDDDDDDEEEDEQQEPSPAPEGRRLYVGNLPYAMTSSQLTEVFGEAGRVEAVEIVYDRVTDRSRGFAFVTMGSFEEAKEAIRMFDGSQVGGRSVKVNFPEVPRGGEREVMGPKIRSSYRGFVDSPYKIYAGNLGWGLNSQGLRDAFADQPGLLSAKVLYDRDSGRSRGFGFVSFASEEEAESAINAMNGVEVEGRPLRLNMAAERATTGTPQRQETKSDMKEDIRSNAIQSSISAY* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00760 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
Eupl01g00760 339 CDD RRM1_PSRP2_like 127 206 - -
Eupl01g00760 339 SMART rrm1_1 127 200 IPR000504 GO:0003723
Eupl01g00760 339 SMART rrm1_1 230 303 IPR000504 GO:0003723
Eupl01g00760 339 FunFam 33 kDa ribonucleoprotein, chloroplastic 211 315 - -
Eupl01g00760 339 MobiDBLite consensus disorder prediction 85 128 - -
Eupl01g00760 339 MobiDBLite consensus disorder prediction 90 118 - -
Eupl01g00760 339 PANTHER OS02G0815200 PROTEIN 59 310 - -
Eupl01g00760 339 MobiDBLite consensus disorder prediction 307 339 - -
Eupl01g00760 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 197 IPR000504 GO:0003723
Eupl01g00760 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 301 IPR000504 GO:0003723
Eupl01g00760 339 Gene3D - 78 210 IPR012677 -
Eupl01g00760 339 Gene3D - 211 323 IPR012677 -
Eupl01g00760 339 SUPERFAMILY RNA-binding domain, RBD 123 308 IPR035979 GO:0003676
Eupl01g00760 339 CDD RRM2_NsCP33_like 230 305 - -
Eupl01g00760 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00760 Eupl-Chr1 25515215 25518027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00760 113 308 Eukaryotic Initiation Factors Gene Family AT3G16380 31.000 4.80e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00760 - - nnu:104590617 329.717