Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00753 ATGAACAGCACTGTCGGTTCTGGTGGGCTGCTCTCCGACAAGATCGGTGGGGTTGGCTATGGCATTGGGGTCTCCGTCGGCATCCTCCTCCTCATTACCACCATCACACTTGCATCCTACTTCTGCTCCCGTACACACATGCCACCAGCTCTGCCTCGACAAAACTCCCTTGATCCCCCTGACCATAACTTCATCGCTGTCGAAGTAGGCCTAGATGAGGCCACCCTGTTGAGTTACCCCAAGATCCTCTACTCCCAAGCTAAGCTTCGCAAAAAGGATACCACAGCCTCCTGCTGCTCCATCTGCTTGGCTGATTACAAGGGCACGGACATGCTTCGGTTGCTACCAGATTGCGGACACCTCTTCCATCTCAAGTGCGTCGACCCATGGTTGAGGCTGCATCCCACTTGCCCTGTTTGTCGAACCTCTCCAATCCCAACTCCCCTCTCGACCCCTCTGGCGGAGGTGGTTCCATTGGCAAGTCAGCGGGACGCATGTGACTTGGCAATGTGGCTTTCGGTAGAACCGCGAAAGCCAACATCAGAGAGCTACAACGAGAAGAGAAACTGTCATTTTACAGAATTCCTCTTTGACTTGGCCATTGTGTATGTCTTTGCGACCCAAACATCAGCATGA 636 0.5346 MNSTVGSGGLLSDKIGGVGYGIGVSVGILLLITTITLASYFCSRTHMPPALPRQNSLDPPDHNFIAVEVGLDEATLLSYPKILYSQAKLRKKDTTASCCSICLADYKGTDMLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASQRDACDLAMWLSVEPRKPTSESYNEKRNCHFTEFLFDLAIVYVFATQTSA* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00753 211 CDD RING-H2_EL5-like 98 141 - -
Eupl01g00753 211 SMART ring_2 99 140 IPR001841 -
Eupl01g00753 211 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 IPR045899 -
Eupl01g00753 211 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Eupl01g00753 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 145 IPR013083 -
Eupl01g00753 211 Pfam Ring finger domain 99 141 IPR001841 -
Eupl01g00753 211 SUPERFAMILY RING/U-box 81 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00753 Eupl-Chr1 25418233 25421227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00753 1 168 C3H Transcription Factor Family AT5G06490 48.990 9.05e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00753 - - jre:109013615 229.18