Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00734 ATGGAGGTTTCAGAGATGGATGAGACCAAGATGACTGAGAGTCATCTGACATCACCTGCTGCTTTCGTGGAGGGGGGAATACAAGAAGCCTGTGACGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGATAGTGATCCTTCAACTGTTACAAGTTGCAAGCACGAGTTTCATCTTCAGTGCATTCTTGAATGGTGTCAAAGGAGCTCCCAGTGCCCTATGTGTTGGCAATCCATCAGCCTGAAGGATCCTACCAGTCAAGAACTGCTTGAGGCGGTAGAACGGGAGAGAAGCTTGAGGTTTAACCCATCACGAAATGCCACAATATTTCATCATCCCACCCTGGGGGATTTTGAATTACAGCATTTACCGGTAGGTGCAAATGATGGCGAACTTGAAGAACGTATTATCCAGCACTTGGCTGCTGCTGCTGCAATGGGAAGAGCTCATCACATTGCTAGAAGGGAAGGCCAGAGGAGTAGGTCAACTACTCAGGGTCGTCCACAGTTCTTATTGTTGTCCACTCATCCTAATTCTTCTGCTGGTCCTGTTTCTTCCTCTCCACCTCAGAGAGGAGGGGAAAATGAACCGGCTCCTGCAATCACCGCAGCTAGTCCATCTGTCTCTTTTACAGCTGTGGGAGAAGAACCCTTGCAATGGGTTCCACAGTTACCTTCTGCCCAAACTGATCAGATTTCTTCCTCAGCATCTGGATCTAGTGTTCTTGCAACCAATCAATATGGGCTTTCCTTTAATCGAAATTCTGCTAGTCAGTCTTCTCCAGTAAGTCAAGATAGAGCAGGACCGTCTGATTTTCAATCGTTTTCGGAATCTCTAAAATCTCGATTTAATGCAGTCTCAATGAGATACAAAGAGTCAATCACGAAGGGTACAAGAGGATGGAAGGAGAGACTGTTCTCCCGGAACACGTCCTTGGCAGATCTTGGTACTGAAGTTAGGAGAGAGGTAACCGCTGGAATTGCTAGTGTATCACGCATGATGGAGCACCTTGAGACCGGAGAAAATACTAGGGCCAATGGTCCTTCTGTTTCAGATAACTTGGAGGGAGGTTCAGTTACAGAGCCGAGTAACCAGAGGATTGTAGAGACTCATAGTAATAATGCTTTGAGTGATAGCAATACGTCAGCTTCGTGTGCTGCAAGCTCAGGTCCAAATTAA 1179 0.4665 MEVSEMDETKMTESHLTSPAAFVEGGIQEACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVERERSLRFNPSRNATIFHHPTLGDFELQHLPVGANDGELEERIIQHLAAAAAMGRAHHIARREGQRSRSTTQGRPQFLLLSTHPNSSAGPVSSSPPQRGGENEPAPAITAASPSVSFTAVGEEPLQWVPQLPSAQTDQISSSASGSSVLATNQYGLSFNRNSASQSSPVSQDRAGPSDFQSFSESLKSRFNAVSMRYKESITKGTRGWKERLFSRNTSLADLGTEVRREVTAGIASVSRMMEHLETGENTRANGPSVSDNLEGGSVTEPSNQRIVETHSNNALSDSNTSASCAASSGPN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00734 392 Pfam Ring finger domain 34 75 IPR001841 -
Eupl01g00734 392 MobiDBLite consensus disorder prediction 172 192 - -
Eupl01g00734 392 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Eupl01g00734 392 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Eupl01g00734 392 SUPERFAMILY RING/U-box 27 83 - -
Eupl01g00734 392 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 84 - -
Eupl01g00734 392 MobiDBLite consensus disorder prediction 339 392 - -
Eupl01g00734 392 MobiDBLite consensus disorder prediction 342 392 - -
Eupl01g00734 392 SMART ring_2 35 75 IPR001841 -
Eupl01g00734 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 84 IPR013083 -
Eupl01g00734 392 MobiDBLite consensus disorder prediction 172 201 - -
Eupl01g00734 392 MobiDBLite consensus disorder prediction 252 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00734 Eupl-Chr1 25130940 25145312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00734 32 83 C3H Transcription Factor Family AT4G00335 44.231 2.90e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00734 K19043 - nnu:104601458 607.831