Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00733 ATGGACAAATCTATTTTGTCAGTTGAGGATGTCGACTCTACCCCTGAAGGGTCAAATGAGCTGGCTAACCTACTGATTAACGTACCCCATGGAAGAAAGCCGACTATTCTTGGAAACAAGGATATAGACAGAATGATGGAGTGTCCTGTGTGTAGTAAATCCATGTATCCACCTATTCAGCAGTGTCCTAGTGGGCATACCCTATGTTTAGATTGCAAATCTAAAGTCAACAACAAGTGTCCCATCTGCAAAAAGGAAATTGGAAATATAAGATGTCTGGTGCTTGAAAAATTTGCACATTCCTTCTTCCTTCCATGCACATACCACAGTCTTGGATGCCAAGAGATGCTCCCTTATTACAGCAAGGTAAAGCATGAGGCTCAGTGCATCTTCAGGCCATACAGCTGCCCCCACCCGGGCTCGGATTGCTCAGTCACGGGAGATGTACCAACTCTGTTGGCCCATCTGAGGGTGAGTCACAAGGTTGATCTTCAGACGGGATGCACTTTCAATCACCGTTATGTGAAACAGGACCCATGTTCAGTTGACAATGTGTCCTGGACGCTTACTCTCTTCAATTGCTTCAATCACTACTTCTGCCTCCACTTTGAAGCGTTTTGCTTGGGAACTGAGCCAGTTTACATGGCTTTCGTGCGTTTCATGGGTGAGGAATCTGAAGCTAGAAAGTTTGGATACTGCCTTGAGATTGGTGGAAATGGTCGAAAGCTGACATGGCAAGGTGTGCCTCGGAGCATTCGGACCCACCACCGGAGTGTCCGAGACAGTCACGATGGCCTCATTATTCAGAGGAGCTTGGCCCTATATTTCTCAGGGGGTGATGGAAGGGAGCTGAAGTTGAGGGTCACTGGCAGAATATGGAAGGAACAATGGTGA 894 0.4709 MDKSILSVEDVDSTPEGSNELANLLINVPHGRKPTILGNKDIDRMMECPVCSKSMYPPIQQCPSGHTLCLDCKSKVNNKCPICKKEIGNIRCLVLEKFAHSFFLPCTYHSLGCQEMLPYYSKVKHEAQCIFRPYSCPHPGSDCSVTGDVPTLLAHLRVSHKVDLQTGCTFNHRYVKQDPCSVDNVSWTLTLFNCFNHYFCLHFEAFCLGTEPVYMAFVRFMGEESEARKFGYCLEIGGNGRKLTWQGVPRSIRTHHRSVRDSHDGLIIQRSLALYFSGGDGRELKLRVTGRIWKEQW* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00733 297 ProSiteProfiles Zinc finger SIAH-type profile. 101 161 IPR013010 GO:0008270
Eupl01g00733 297 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 42 295 - -
Eupl01g00733 297 Pfam Seven in absentia protein family 90 289 IPR018121 GO:0005737|GO:0006511|GO:0007275
Eupl01g00733 297 SUPERFAMILY RING/U-box 42 89 - -
Eupl01g00733 297 CDD RING-HC_SIAHs 47 84 - -
Eupl01g00733 297 FunFam E3 ubiquitin-protein ligase SINAT3 98 156 - -
Eupl01g00733 297 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Eupl01g00733 297 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 289 IPR008974 GO:0005515
Eupl01g00733 297 FunFam E3 ubiquitin-protein ligase SINAT5-like 157 289 - -
Eupl01g00733 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 91 IPR013083 -
Eupl01g00733 297 SUPERFAMILY TRAF domain-like 103 293 - -
Eupl01g00733 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00733 Eupl-Chr1 25097521 25106762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00733 25 296 C3H Transcription Factor Family AT2G41980 62.633 1.49e-134 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00733 K04506 - msin:131232479 535.028