Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00707 ATGTCTCCCAAGACCGCTCCCGGCTCCGTCCTGAAGAAAAAGATCACCAAAATCACCCCAAAAGCCACCGCCAAAACCACATCTAAGCCTAACTCCAAAACAACTGCTAAAATTACCGCTAAACTTTCTCCCCAGAACTCCGCTAAAACCTCTACCAAAACCTCCGTTAAAACTAACTCTAAAATTTCCCCTGAAACCTCCTCCGCTAAAACAACCGCCGAAATCACCACTATATCCTCTCCAGAAACCACCATTAAAACCATTACCCCAGAGATCACTCCCAAAACCTCCACCCGTGAAATCTCCTTTGAAACCATTCCTCCTGAATCCTCCGCTAAGACCACCACCCCACCTATATCCTCAGCTAAAAGCACTCCAGTAACCAATGAAACCTCCCCAGAAACCCCTGCTAAAACTACCGCTAACACCGTCGCTAAAACTGCCGCTAAAACCGCTGCTAAGAAAACCATCAGAGTCGTAAAGAAGGTTATCAAGAAGAAAGTTGTTAAACGAGCACAAAAGGTTCCAGAAATTCCTCCTAGTGGAGAATTAGAGAAACCGGAGCTTCTGGTTGACAAAGAAAAACCTAGCTCTTCCTCTTCAGTTCCAATTGAAGCAGAAATCCCTAGGCAATCCGATCTTTCCGTAGCAGAAAACCCTAGTTCTGCTACTGCTGTCCCCACAGAAGCTCCGAATGTTAATTCGGTCAGAGATCAGAGTGATGGAGATGCTGATGGAAATCGAGATTCCCGTAATGTAGGTGATAAAGAAGTGCTAGCGAAGGAAGAGGTGGCAAATTGTGAGGTTGGTGATTCTAAGGAGGAAGATGGAGGGATTCGTGATGAGGAAATGGAGGTTTCAGAGCGACGAAGGAGACGGAAGACAGAGATTTTTATCGGAGGTTTGGATAAGGATGCGAAGGAGGAGGATATCCGAAAGGTTTTCGAGAAGATTGGCGAGGTTGTGGAGGTTCGGTTGATGATGAACAATCAGACTGGGAAGAATAAGGGTTACGCCTTCCTGAGGTATGCTACGGCGGTCGATGCTAAAAGAGCTTTGAAAGAATTCTCCAAAGTTGAGGTTTGTGGAAAGGAAAGTAGAGCAGCACCTATTGAGGGCAATGACACAATATTTCTTGGTAATATTGAGAAGACATGGAAGAAAGATGATGTCCTTAAGTTATTGCAGGAAATTGGAATTGAGAAAATTGACATGGTTACAGTTATGAGTGATCGTAACAATGCTGAATGTAATCGTGGTTTTGCGTTTCTGGAACTTGAAACTAACAAAGATGCACAAAATGCTTACAAGAAACTTCAAAAGAAGGGTGTTTTTGGCAAGGACCAGAATATCAAAGTTGCTTGGGCTGAACCTGTAAATGAGCTGGATGAAGAAGAGACGCTGAAGGTAAAATCAGTTTATGTAGAAGGTGTGCCATCCTCATGGGACGAGGAAAAAGTGAGAAAGTACTTCAAAAAATTTGGGGAGATTGATAGAGTTGTTCTTGCACGAAATATACGTTCGGCTAGGCGAAAAGACTTTGCTTTTGTTAATTACACAGCTCGTGAGGCTGCTCTTGCATGCATCGAGTCATTCAGTAAGGAGGAGTGGATTGATGAGGGCTCAAAGGTGGGTGTGAAGGTGTCACTTGCCAAACCTACATCAAGGGGTAAGCAAAGTAAAGGAAGCTCAAAACCCATTAGCAAGAATCATTCCAAAGAGAAACCCAAGACAGTCCACCGTAACGCCAACATAAGTGCTCTTGCCAACGAAGGGCAAACTGTTAAAGCAGCTTATGTCACAAGTAGAGACGATAAAAAGTCCTCTAGGATCAATGAACATGTACAAGTTTTGAGAGAGCAGGCTGCTTGGAGGCAGGCATGGATAGGTTCCCGAAAAGGCACAGCCAATCAAGATTATACGTACTCCTTATCTGATGGGAAGCGCCCATTTTCTGCATTGGTAACTCTAAAATGTTTGACTAAATGCACTTTTTGGGCTATCCGCTTGCTTAAAATGTCCTCAACATTTTGTTGGATGCTGCAGGGAGATGATGTACTTTATTCAGATCAGAGAGGGTATCCTCGTGGACGTTTGGATTCTTTTCCAATTGCTAGCTCAAGTTATAGTGCATTGTCCAAAGATGTGGGTGCACCTCTGCCCTATTATCAGCAACCAAGAGCTGGTTATGCAGCAGGCTCGTTTTATGGGGCTGCAGAGAGTTTAAGTGCCATGCAGATGAGACAAGAAGTTGCACTTTATAGAAGTGAGCTGTATCATAGATACTGA 2289 0.4395 MSPKTAPGSVLKKKITKITPKATAKTTSKPNSKTTAKITAKLSPQNSAKTSTKTSVKTNSKISPETSSAKTTAEITTISSPETTIKTITPEITPKTSTREISFETIPPESSAKTTTPPISSAKSTPVTNETSPETPAKTTANTVAKTAAKTAAKKTIRVVKKVIKKKVVKRAQKVPEIPPSGELEKPELLVDKEKPSSSSSVPIEAEIPRQSDLSVAENPSSATAVPTEAPNVNSVRDQSDGDADGNRDSRNVGDKEVLAKEEVANCEVGDSKEEDGGIRDEEMEVSERRRRRKTEIFIGGLDKDAKEEDIRKVFEKIGEVVEVRLMMNNQTGKNKGYAFLRYATAVDAKRALKEFSKVEVCGKESRAAPIEGNDTIFLGNIEKTWKKDDVLKLLQEIGIEKIDMVTVMSDRNNAECNRGFAFLELETNKDAQNAYKKLQKKGVFGKDQNIKVAWAEPVNELDEEETLKVKSVYVEGVPSSWDEEKVRKYFKKFGEIDRVVLARNIRSARRKDFAFVNYTAREAALACIESFSKEEWIDEGSKVGVKVSLAKPTSRGKQSKGSSKPISKNHSKEKPKTVHRNANISALANEGQTVKAAYVTSRDDKKSSRINEHVQVLREQAAWRQAWIGSRKGTANQDYTYSLSDGKRPFSALVTLKCLTKCTFWAIRLLKMSSTFCWMLQGDDVLYSDQRGYPRGRLDSFPIASSSYSALSKDVGAPLPYYQQPRAGYAAGSFYGAAESLSAMQMRQEVALYRSELYHRY* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00707 762 MobiDBLite consensus disorder prediction 214 240 - -
Eupl01g00707 762 SUPERFAMILY RNA-binding domain, RBD 372 460 IPR035979 GO:0003676
Eupl01g00707 762 SMART rrm1_1 472 547 IPR000504 GO:0003723
Eupl01g00707 762 SMART rrm1_1 296 369 IPR000504 GO:0003723
Eupl01g00707 762 SMART rrm1_1 376 454 IPR000504 GO:0003723
Eupl01g00707 762 CDD RRM_SF 297 365 - -
Eupl01g00707 762 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 376 IPR000504 GO:0003723
Eupl01g00707 762 MobiDBLite consensus disorder prediction 20 149 - -
Eupl01g00707 762 Gene3D - 459 583 IPR012677 -
Eupl01g00707 762 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 551 IPR000504 GO:0003723
Eupl01g00707 762 Gene3D - 229 371 IPR012677 -
Eupl01g00707 762 Gene3D - 374 457 IPR012677 -
Eupl01g00707 762 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 458 IPR000504 GO:0003723
Eupl01g00707 762 SUPERFAMILY RNA-binding domain, RBD 295 531 IPR035979 GO:0003676
Eupl01g00707 762 CDD RRM_SF 377 453 - -
Eupl01g00707 762 MobiDBLite consensus disorder prediction 1 154 - -
Eupl01g00707 762 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 534 IPR000504 GO:0003723
Eupl01g00707 762 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 447 IPR000504 GO:0003723
Eupl01g00707 762 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Eupl01g00707 762 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 131 656 - -
Eupl01g00707 762 MobiDBLite consensus disorder prediction 168 258 - -
Eupl01g00707 762 MobiDBLite consensus disorder prediction 241 258 - -
Eupl01g00707 762 MobiDBLite consensus disorder prediction 549 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00707 Eupl-Chr1 24628923 24648175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00707 295 538 Eukaryotic Initiation Factors Gene Family AT1G49760 25.581 3.12e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00707 - - ming:122086956 618.616