Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00672 ATGGCGATTGCAAGAACAGGTGTTTTCGTGGATGATTATTTAGAGTATTCAAGCACATTACCAGCAGAGCTTCAAAGGCTTCTCAACACCATGAGAGAACTCGATGAGAGGTCCCAAGCCATGATCAATCAAACGAGAGAGCAGACAAAGTATTGTTTGGGGTTGCCATCTCAAATATCGAGGAGAGTAAACCACGAAGAAGATGAAGCAGCATTTGAGAAGATGCGAAAAGATATCGAGGTGAACCAGGAGAATGCATTGAGTCTCTGCACTGAGAAAGTCTTGCTCGCGCAGCAAGCGTATGAACTTATAGATAGCCATGTGAAAAGGCTCGATGAAGATCTGAACAACTTTGCAGAAGATCTAAAGCAAGAGGGGAAAATATCACCAGATGAGCCGGCAATCCTTCCTCCATTACCTATAGTCCCAAAAGACGAAAAACGCAAACCCTTCTTTGGAACACCTCAATCAAAGAGGATTGATTTCAGAGATAGGGACTGGGATCGAGATTTTGAGCTCATGCCTCCTCCTGGAAGCCATAAGAAAAGTGTTCCTGCCCCTGTTGATGTTGACCAACCCATTGATCCAAACGAACCAACCTACTGCGTCTGTCACCAGGTGTCTTTTGGTGATATGATTGCCTGCGACAATGATAATTGTCAAGGAGGAGAATGGTTCCATTACTCATGTGTTGGGCTCACTCCGGAGACAAGATTTAAGGGAAAGTGGTACTGCCCTACCTGCAAATTACAACCATCATGA 762 0.4462 MAIARTGVFVDDYLEYSSTLPAELQRLLNTMRELDERSQAMINQTREQTKYCLGLPSQISRRVNHEEDEAAFEKMRKDIEVNQENALSLCTEKVLLAQQAYELIDSHVKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPIVPKDEKRKPFFGTPQSKRIDFRDRDWDRDFELMPPPGSHKKSVPAPVDVDQPIDPNEPTYCVCHQVSFGDMIACDNDNCQGGEWFHYSCVGLTPETRFKGKWYCPTCKLQPS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00672 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Eupl01g00672 253 Gene3D - 5 116 - -
Eupl01g00672 253 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Eupl01g00672 253 FunFam PHD finger protein ING 193 251 - -
Eupl01g00672 253 Pfam PHD-finger 201 249 IPR019787 -
Eupl01g00672 253 Coils Coil 24 44 - -
Eupl01g00672 253 SUPERFAMILY FYVE/PHD zinc finger 177 249 IPR011011 -
Eupl01g00672 253 CDD ING_plant 17 115 - -
Eupl01g00672 253 SMART ING_2 9 118 IPR024610 -
Eupl01g00672 253 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 118 IPR024610 -
Eupl01g00672 253 PANTHER INHIBITOR OF GROWTH PROTEIN 2 249 IPR028651 -
Eupl01g00672 253 SMART PHD_3 201 249 IPR001965 -
Eupl01g00672 253 CDD PHD_ING 201 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00672 Eupl-Chr1 23982028 23992711 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl01g00672 ING 4.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00672 - - nnu:104606301 479.944