Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00664 ATGGATTTCTGCCGGAATGTGTCAGTTCCCGGTGGCTTGCCGTCGGAGTATCCTTCAGAGCAGGTTCTTTCTCCGGTTTGCTCTAAGCTTGGGGGCTTCTCTAGTTCTCTAGACGACCTTTTCCCCAGTGAGAATACTGAGGGTGATGTTAGCTTAGAATGGCTCTCAATCTTTGTAGAGGACTGCTTCTCCAGCACTGGAAACTGCATCCCTGCACCTACAGACCAAAACAACCCAATCCCACAACACTCGTCCTCAAAACACTCGGAAAAAACCAAGCAAAGCCCTCCATCCCTACAAGAGTTTATAATCCCAGGCAAGGCAAGGAGCAAAAGAAAAAGAACCACACCAACTACACCAACCACCCAATTAAGCAGTTGGACTCATCTAGACCCACAAAACCAACCCCTCCATGTGGCCACCTCAGACTGTCCTTTACTCCACCAAGCTTATTGGTTAGCTGATAGTGAACTCATTGTACCTAAAAAGGAGAATAATTATAGTAGAGAAGAAGAAAGAGCAGAGGAGGAGAAGATGGTCAAGGACAGTTCGGGCAGCTCGGGCAGTTTGGAGGGCAGTCCCGGGCAACCTAGGAGGTGCACCCACTGCCTAGCTCAAAGGACCCCACAGTGGAGGGCAGGGCCTTTGGGTCCCAAAACACTGTGTAATGCATGTGGGGTGAGATTCAAGTCGGGCAGGTTGTTGCCCGAATATAGGCCAGCCAAAAGCCCCACTTTTGTGAGTTATAAGCATTCTAATTCCCACAAGAAAGTTATGGAGATGAGAATGTCTGAGTTTTCCATGTAA 807 0.487 MDFCRNVSVPGGLPSEYPSEQVLSPVCSKLGGFSSSLDDLFPSENTEGDVSLEWLSIFVEDCFSSTGNCIPAPTDQNNPIPQHSSSKHSEKTKQSPPSLQEFIIPGKARSKRKRTTPTTPTTQLSSWTHLDPQNQPLHVATSDCPLLHQAYWLADSELIVPKKENNYSREEERAEEEKMVKDSSGSSGSLEGSPGQPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRFKSGRLLPEYRPAKSPTFVSYKHSNSHKKVMEMRMSEFSM* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00664 268 FunFam GATA transcription factor 191 268 - -
Eupl01g00664 268 SMART GATA_3 194 248 IPR000679 GO:0006355|GO:0043565
Eupl01g00664 268 MobiDBLite consensus disorder prediction 73 99 - -
Eupl01g00664 268 Pfam GATA zinc finger 200 234 IPR000679 GO:0006355|GO:0043565
Eupl01g00664 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 258 - -
Eupl01g00664 268 MobiDBLite consensus disorder prediction 73 133 - -
Eupl01g00664 268 ProSitePatterns GATA-type zinc finger domain. 200 225 IPR000679 GO:0006355|GO:0043565
Eupl01g00664 268 MobiDBLite consensus disorder prediction 164 182 - -
Eupl01g00664 268 ProSiteProfiles GATA-type zinc finger domain profile. 194 230 IPR000679 GO:0006355|GO:0043565
Eupl01g00664 268 PANTHER GATA TRANSCRIPTION FACTOR 34 264 - -
Eupl01g00664 268 MobiDBLite consensus disorder prediction 115 133 - -
Eupl01g00664 268 CDD ZnF_GATA 199 246 IPR000679 GO:0006355|GO:0043565
Eupl01g00664 268 Gene3D - 192 262 IPR013088 GO:0006355|GO:0008270
Eupl01g00664 268 MobiDBLite consensus disorder prediction 164 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00664 Eupl-Chr1 23884771 23886402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00664 52 262 C2C2-Gata Transcription Factor Family AT4G32890 40.708 9.22e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl01g00664 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00664 - - nnu:104597691 358.607