Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00660 ATGGACGGAGGAATTGAACAGGACTACGACGAATTCGAGATGCTTCTGGGCGAGATACCGAACGTGACATCTGCAAATCCCCATCCTGAGGAATCCATTCCCAGCAATTACTCACCAAATTTGGTGGGGCTTCCTTTGGAAGAGGGAAACGGGAAGCCCTCTCTGCCTGCCACTATTACTAACTTTTATCATGCATCTCAGGTGGCACTCCCTGCCAGCAGTGCAGCCCTGTATGGCGGCTTGTCCTTTGAAAGACCCAGCACCGCATATGAGAATTCCTCTCAAGGCTTGCTTGATCAGAAACTCCAAACCAATGGAACTTTTGAGGGATGGAAATTAACTATGCAGAACGGCCATCAATCTCCCCACAAGAATGTTGATAGGGACGATTCAAACCTCCCTGATGACCAATCGTTGACATCTGCATTCACACAGTTGAGCTTTAAGGATGGAGTGGCAATGGAACCAATGAGTCCTCCATTAGTTAATTATAAAACCTTACCGGATTGCACATTTTTACTGGAAGGGCAGTATCCGAACCACTTAAAGAAGCCTCTTTCCAGTTTAAATTCAGGGGGCATGGTCATTCCCTCTCCCCCATCACCCAATATTCCAAATGGAATGACTTTGCTGAGCCGCATATCAAACAGTCTTGATAGATTCGACGTGGAAATGAATGTTCAAGAAAGCGGAAAATTTCTCAAACTTGATGTCCAAGAACTAAAGAAGCAGAAGCCTGGGTCTTGCCAGCTGCTTGAGAACTTAGCAGGTGACTTGGGAGAGCAGCAACAGAGCCTCCCAGTGTACTCTGGAGCTATGCCGTTAGCTCCCAGTATGCACACTTTCCAGGTTCTCTCAAGTGCTCCTGATCCTGGAGTGGAGTTCTCAGTTACGCCGTATCAGCAACAGTACATCTTGGACACACAATCTCCTATTGCTCACATGCAGCCAGAGCAATTAAGCCGGTCTCATATGGCATGGCAGCATATGGAGGAAGAGTGGTATTGCAGAATGCATCAACAATACCTGTACTTGCAACAGCTCCGGAATCAGGGACCTGAAGCTCATCATTCAATTCAAGAAAATACAAATGTGACAAATGGGCCTACAATTAGGAATGCAAGGCAACCATATTTTGAGATGCCCATCTCCCACCAGTTAGAACAGGCCAATAAAACCTTCTGGAATAATGCTGCAATTCAGAGGGGGTTTAACCCATCCGAACATATGCTGATGGGCAGTGGCCTTTGTCGGCAATATGCTCAGGGTTTCTGTGGGAGGGGAGAGAGCTGCCCATTTGCACATGGCCAGAAGAAACCATCTGCAAACAGTTTCTGCCATTCTTCTCCCACATCCAAAGATTTTGAAGCAGTTCAATTTTTGGACAAAATGGGGAAACAGACATTTCCTGAAAAGATTCTAACAAGGTCGCATGGGTTAAACTCACTAAGAACTATCAAGCCTGGCTCTATTGGAGGGCATGAATCACTCAACCATCCCAACTCAAATGAGAGGATGTTTTCAAATGGCCACTTTCACCACCACCCATCCATTCTAAATGCTGGATCCTTCCTGCTAGATGGTCGGACCTCGCGGGGTTCTACCCCTGATAGTGTGGATCTTAGACACAATACTCCGAGGTCACAACCACAGAAATATAACTCCATAGATGAAGTCATTGGCAGAATCTATCTCATGGCAAAGGATCAGCATGGTTGCCGCTTCTTGCAAAGAAAATTTACAGAGGGCAGTGCAGAAGATGTTGAGAAGATATTTGTTGAGATCATTGGTCACATTGTCGAGCTTATGACAGATCCTTTTGGGAATTACCTTGTCCAGAAGCTGCTTGAAGTTTGCAATGAGGATCAGAGGATGCAAATTCTTCACACAGTCACTAGAAAACCTGAGGACATTGTTAGAATCTCATGTGACATGCATGGGACTCGAGCTGTACAGAAGGTGATAGAAACCCTTAAGACTCCGGAGCAATTCTCCATGGTTGTTTCCTCACTGAGGCCTGGTATAGTGGTTCTGATTAAAGACATGAATGGTAATCATGTTGTGCAACGCTGCTTGCAACACTTAATGCCTGAATATAGTGAGTTCCTTTTTGAAGCTGCAGCTGCTCACTGCATTGAGCTTGCAACAGATCGTCATGGCTGCTGCGTGCTTCAAAAGTGCCTCAGCCATTATGGTGAACAGAAGCGCCACTTGATCAGCGAGATCACTTCAAATTCTCTTATCCTCTCCCAAGATCCATTTGGGAATTATGTTGTGCAATATGTCTTTGAACTTCGGGTTCCATGGGCAACGGTAGATGTGCTTGATCAACTAGATGGTAACTATGGATACCTCTCCATGCAAAAATATAGCAGCAACGTGGTCGAGAAATGTCTGAAATATGCAGGTGAAGAGCGCCGTCCTCGGATCATTCAGGAACTAATAAACAACTCCCGATTAGATCAAATTTTGCAGGACCCTTATGGCAATTATGTTATTCAAGCGGCACTTCATCATTCCAAGGGGACTCTTCATGCTACTTTGGTGGAAGCTATCAAGCCCCATGTTCCTGCACTCCGGACAAGCCCATACGGGAAGAAAGTCCTCTCAAGCAACAGTCTGAAGAAGTAA 2631 0.4561 MDGGIEQDYDEFEMLLGEIPNVTSANPHPEESIPSNYSPNLVGLPLEEGNGKPSLPATITNFYHASQVALPASSAALYGGLSFERPSTAYENSSQGLLDQKLQTNGTFEGWKLTMQNGHQSPHKNVDRDDSNLPDDQSLTSAFTQLSFKDGVAMEPMSPPLVNYKTLPDCTFLLEGQYPNHLKKPLSSLNSGGMVIPSPPSPNIPNGMTLLSRISNSLDRFDVEMNVQESGKFLKLDVQELKKQKPGSCQLLENLAGDLGEQQQSLPVYSGAMPLAPSMHTFQVLSSAPDPGVEFSVTPYQQQYILDTQSPIAHMQPEQLSRSHMAWQHMEEEWYCRMHQQYLYLQQLRNQGPEAHHSIQENTNVTNGPTIRNARQPYFEMPISHQLEQANKTFWNNAAIQRGFNPSEHMLMGSGLCRQYAQGFCGRGESCPFAHGQKKPSANSFCHSSPTSKDFEAVQFLDKMGKQTFPEKILTRSHGLNSLRTIKPGSIGGHESLNHPNSNERMFSNGHFHHHPSILNAGSFLLDGRTSRGSTPDSVDLRHNTPRSQPQKYNSIDEVIGRIYLMAKDQHGCRFLQRKFTEGSAEDVEKIFVEIIGHIVELMTDPFGNYLVQKLLEVCNEDQRMQILHTVTRKPEDIVRISCDMHGTRAVQKVIETLKTPEQFSMVVSSLRPGIVVLIKDMNGNHVVQRCLQHLMPEYSEFLFEAAAAHCIELATDRHGCCVLQKCLSHYGEQKRHLISEITSNSLILSQDPFGNYVVQYVFELRVPWATVDVLDQLDGNYGYLSMQKYSSNVVEKCLKYAGEERRPRIIQELINNSRLDQILQDPYGNYVIQAALHHSKGTLHATLVEAIKPHVPALRTSPYGKKVLSSNSLKK* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00660 876 ProSiteProfiles Pumilio RNA-binding repeat profile. 670 705 IPR001313 GO:0003723
Eupl01g00660 876 CDD Pumilio 555 870 IPR033712 GO:0003723
Eupl01g00660 876 Gene3D - 541 875 IPR011989 -
Eupl01g00660 876 ProSiteProfiles Pumilio RNA-binding repeat profile. 558 593 IPR001313 GO:0003723
Eupl01g00660 876 ProSiteProfiles Zinc finger C3H1-type profile. 411 438 IPR000571 GO:0046872
Eupl01g00660 876 SMART pum_5 594 629 IPR001313 GO:0003723
Eupl01g00660 876 SMART pum_5 670 705 IPR001313 GO:0003723
Eupl01g00660 876 SMART pum_5 633 669 IPR001313 GO:0003723
Eupl01g00660 876 SMART pum_5 706 740 IPR001313 GO:0003723
Eupl01g00660 876 SMART pum_5 777 812 IPR001313 GO:0003723
Eupl01g00660 876 SMART pum_5 741 775 IPR001313 GO:0003723
Eupl01g00660 876 SMART pum_5 558 593 IPR001313 GO:0003723
Eupl01g00660 876 SMART pum_5 815 850 IPR001313 GO:0003723
Eupl01g00660 876 SMART c3hfinal6 413 437 IPR000571 GO:0046872
Eupl01g00660 876 ProSiteProfiles Pumilio RNA-binding repeat profile. 630 669 IPR001313 GO:0003723
Eupl01g00660 876 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 308 870 - -
Eupl01g00660 876 Gene3D - 407 466 - -
Eupl01g00660 876 Pfam Pumilio-family RNA binding repeat 784 815 IPR001313 GO:0003723
Eupl01g00660 876 Pfam Pumilio-family RNA binding repeat 562 596 IPR001313 GO:0003723
Eupl01g00660 876 Pfam Pumilio-family RNA binding repeat 749 764 IPR001313 GO:0003723
Eupl01g00660 876 Pfam Pumilio-family RNA binding repeat 598 629 IPR001313 GO:0003723
Eupl01g00660 876 Pfam Pumilio-family RNA binding repeat 825 852 IPR001313 GO:0003723
Eupl01g00660 876 Pfam Pumilio-family RNA binding repeat 638 669 IPR001313 GO:0003723
Eupl01g00660 876 Pfam Pumilio-family RNA binding repeat 675 705 IPR001313 GO:0003723
Eupl01g00660 876 Pfam Pumilio-family RNA binding repeat 710 743 IPR001313 GO:0003723
Eupl01g00660 876 SUPERFAMILY ARM repeat 552 870 IPR016024 -
Eupl01g00660 876 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 534 876 IPR033133 GO:0003723
Eupl01g00660 876 ProSiteProfiles Pumilio RNA-binding repeat profile. 706 741 IPR001313 GO:0003723
Eupl01g00660 876 SUPERFAMILY CCCH zinc finger 410 438 IPR036855 GO:0046872
Eupl01g00660 876 MobiDBLite consensus disorder prediction 530 551 - -
Eupl01g00660 876 ProSiteProfiles Pumilio RNA-binding repeat profile. 813 850 IPR001313 GO:0003723
Eupl01g00660 876 ProSiteProfiles Pumilio RNA-binding repeat profile. 777 812 IPR001313 GO:0003723
Eupl01g00660 876 FunFam Pumilio homolog 9 545 876 - -
Eupl01g00660 876 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 416 437 IPR000571 GO:0046872
Eupl01g00660 876 ProSiteProfiles Pumilio RNA-binding repeat profile. 594 629 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00660 Eupl-Chr1 23794100 23807604 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl01g00660 PUF 2.2e-10 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00660 - - tss:122642763 1240.71