Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00642 ATGGAACTGCAATTCCAACACCACCACAACCAGCAACAACAAAGAGAGATTTCAGTTAGTAAAGGAAGCAAATTCAAGGGGAGGAGTAAAAGCAATAGCAACAACAAGTTTGTTGGTGTGAGACAAAGGCCTTCTGGGAGATGGGTAGCAGAGATCAAGGACACAACACAGAAGATAAGGATGTGGCTCGGCACGTTCGAGACCGCGGAAGAAGCCGCTCGAGCATACGATGAAGCAGCTTGCCTTCTTCGTGGATCCAATACTCGCACCAACTTCATCACCCATGTCTCCTCCGATTCCCCACTCGCTTCGCGAATTCGGAATCTCCTCAATCACAAAAAAGGTGTACAACAACACCCTCTTCATACCTCCCCCTCCCCTATCACCACAACTACACTTTGCACTAGCACTAGCACAAGTACTTGCACTAGTACTAGCACTAGTACTAGTAGTAGTAATGGTAGTAGAAGTAGTAGTTCTCTATCGTATGATAAGAAACAAGAGAACCAGATATTTGATGATGGATATAGACCTGTTTTAAGTAATTGTGTCGACGAATTCGAATTGGGAAATTCTTCTCAATCCGATCTCTCTTGGTTCTTTGGACCTGGTTTCGATCGGTTTCCAAGCACTCAAGAAGGGATGGAGATGCCAAAGAATGTAGTCTTTCCCGAAACAACTGAGTCGGAGATCACCGAATTCGAAAGGATGAAGGTAGAGAGACAGATATCGGCGTCGCTCTATGCAATGAATGGGGTGCAGGAGTACTTGGAGACTGTTCATGATCCTACTGATGCTTTATGGGATCTCCCTCCTCTATGTCAATTGTTCTGCCCCATTTGA 843 0.4531 MELQFQHHHNQQQQREISVSKGSKFKGRSKSNSNNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSSDSPLASRIRNLLNHKKGVQQHPLHTSPSPITTTTLCTSTSTSTCTSTSTSTSSSNGSRSSSSLSYDKKQENQIFDDGYRPVLSNCVDEFELGNSSQSDLSWFFGPGFDRFPSTQEGMEMPKNVVFPETTESEITEFERMKVERQISASLYAMNGVQEYLETVHDPTDALWDLPPLCQLFCPI* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00642 280 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Eupl01g00642 280 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Eupl01g00642 280 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Eupl01g00642 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 244 - -
Eupl01g00642 280 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Eupl01g00642 280 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Eupl01g00642 280 MobiDBLite consensus disorder prediction 116 164 - -
Eupl01g00642 280 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Eupl01g00642 280 MobiDBLite consensus disorder prediction 1 39 - -
Eupl01g00642 280 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Eupl01g00642 280 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Eupl01g00642 280 MobiDBLite consensus disorder prediction 117 164 - -
Eupl01g00642 280 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00642 Eupl-Chr1 23440136 23441072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00642 24 279 AP2-EREBP Transcription Factor Family AT5G19790 47.148 3.57e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl01g00642 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00642 K09286 - ming:122060558 318.161