Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00640 ATGAGAAAGCCATCTTCGGCGTCAGGAGGGGCGGTGGCGTCATCGTCGACGAGTAAAACGAAGACGCCGTGTTGTACTAAAGTGGGTTTGAAGAGAGGACCGTGGACACCGGAGGAAGATGAGCTTTTGGCCAATTATATAAGGAAAGAGGGGGAGGGGCGGTGGCGGACGCTGCCCAAGCGGGCGGGGCTGCTCCGCTGTGGCAAGAGTTGTCGTCTTCGCTGGATGAATTATCTCCGGCCGTCTGTGAAACGGGGCCAGATCGCTCCTGATGAAGAAGATCTCATTCTTCGCCTTCACCGTCTACTCGGTAACAGATGGTCTTTGATTGCTGGGAGGATCCCAGGACGTACCGACAACGAGATCAAGAACTACTGGAATACCCATCTCAGTAAGAAATTGATCAGCCAGGGAATAGATCCCAGAACCCACAGGCCATTAAACCCTAACCCTAATCACTCAGCAGATGTCCAAGATCCTGCACCAAAACCGAACTCCAATCACAACCCTAATCCTAGTCCTTCTGGTTTAGAAGAAATGGGTGGAGATGTTGTCAGCAACGGTAATGCGTATCTCAAAGGGACTACTAACCTGGATCAGAATCACAGTTGGCAGAATTCTGATGGGTTGATAATGGGTAGGCAAATCAACCATAGGAACAGCGACGAAGAAGATGATATGGAATACTGCACCGACGATATCTTCTCTTCGTTCTTGAATTCCTTGATTAACGAAGACATGCTTCTAAATCAACAACAGCAGCTGCAGCAACAGACTAATGTGATTGCAGCACCTTCCGACGCTTTAGCATCTTCTGCACAGACATTTGGATATGGCGCCATGTGGGATGCTGCATTCTCGTCTTCCATGGCTGCTTTCCACGAAGACGAACACAAGCGGTTCGTCGATCATGTCAGTAAGCGCTTCTGA 930 0.4968 MRKPSSASGGAVASSSTSKTKTPCCTKVGLKRGPWTPEEDELLANYIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHRPLNPNPNHSADVQDPAPKPNSNHNPNPSPSGLEEMGGDVVSNGNAYLKGTTNLDQNHSWQNSDGLIMGRQINHRNSDEEDDMEYCTDDIFSSFLNSLINEDMLLNQQQQLQQQTNVIAAPSDALASSAQTFGYGAMWDAAFSSSMAAFHEDEHKRFVDHVSKRF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00640 309 MobiDBLite consensus disorder prediction 147 174 - -
Eupl01g00640 309 Gene3D - 87 156 - -
Eupl01g00640 309 Gene3D - 29 85 - -
Eupl01g00640 309 Pfam Myb-like DNA-binding domain 32 79 IPR001005 -
Eupl01g00640 309 Pfam Myb-like DNA-binding domain 89 130 IPR001005 -
Eupl01g00640 309 MobiDBLite consensus disorder prediction 139 206 - -
Eupl01g00640 309 CDD SANT 90 130 IPR001005 -
Eupl01g00640 309 MobiDBLite consensus disorder prediction 1 24 - -
Eupl01g00640 309 MobiDBLite consensus disorder prediction 189 206 - -
Eupl01g00640 309 SMART sant 84 132 IPR001005 -
Eupl01g00640 309 SMART sant 31 81 IPR001005 -
Eupl01g00640 309 SUPERFAMILY Homeodomain-like 29 126 IPR009057 -
Eupl01g00640 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 79 IPR017930 -
Eupl01g00640 309 ProSiteProfiles Myb-like domain profile. 27 79 IPR001005 -
Eupl01g00640 309 FunFam Myb transcription factor 29 85 - -
Eupl01g00640 309 CDD SANT 34 79 IPR001005 -
Eupl01g00640 309 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Eupl01g00640 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Eupl01g00640 309 MobiDBLite consensus disorder prediction 1 25 - -
Eupl01g00640 309 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 21 243 - -
Eupl01g00640 309 FunFam transcription repressor MYB5-like 89 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00640 Eupl-Chr1 23377982 23380867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00640 17 245 MYB Transcription Factor Family AT3G13540 58.079 2.39e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl01g00640 Myb_DNA-binding 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00640 K09422 - nnu:104611131 394.43